PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g050560.1 | ||||||||
Common Name | MTR_7g050560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 316aa MW: 36267.1 Da PI: 10.3164 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.8 | 1e-18 | 14 | 104 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fk+ + + +l++g l++p+kf+e++g + s + l++++g +W+++l k g+++++kGWkeF++ + L g ++Fk+ ++s+f +v+ Medtr7g050560.1 14 FKIIL-AQNLQEGKLMMPRKFVEKYG--EGLSNAIYLKTPNGAKWKLNL--LKINGKIWFEKGWKEFAEHHSLAHGHLLLFKYLRNSRF--LVR 100 55553.56677778***********8..458899***************..999999***************************99999..*** PP EE-S CS B3 96 vfrk 99 +f+k Medtr7g050560.1 101 IFEK 104 *997 PP | |||||||
2 | B3 | 50.4 | 4.1e-16 | 192 | 291 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ v+ s+v + ++ +p+kf ++h +++k+++ ++ l + W k+ +r + ++ + lt+GWk F+k+n+Lk+ D++ F+l++ + + Medtr7g050560.1 192 FVVVMRASYVEHRFLVNIPRKFGNRHfDLDKKRG-DVYLVL-NEGIWPAKYLIRMTLKGphFDLTTGWKAFAKDNKLKVDDVCKFELISCTILT 283 788999********************96666555.777655.4567888886655544455**************************9778888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 + v++fr+ Medtr7g050560.1 284 FIVHIFRE 291 99999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-24 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-24 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.565 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.53E-17 | 12 | 102 | No hit | No description |
SMART | SM01019 | 2.9E-21 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-16 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 180 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-20 | 188 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.36E-19 | 190 | 290 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 192 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-15 | 192 | 291 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-15 | 192 | 292 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MASETLELKP IHFFKIILAQ NLQEGKLMMP RKFVEKYGEG LSNAIYLKTP NGAKWKLNLL 60 KINGKIWFEK GWKEFAEHHS LAHGHLLLFK YLRNSRFLVR IFEKSALEIN YPFQRVAAKN 120 VSNGQKRKAN SSFEFHQPCE IGSNSCVEVD KLNKVATLHH AGRESKGKQV LATKRVTALE 180 RAQSFKTCNP SFVVVMRASY VEHRFLVNIP RKFGNRHFDL DKKRGDVYLV LNEGIWPAKY 240 LIRMTLKGPH FDLTTGWKAF AKDNKLKVDD VCKFELISCT ILTFIVHIFR ETDNDNTNCS 300 ASQKFSQVKE EASQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g050560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC169180 | 0.0 | AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003622663.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7KVV4 | 0.0 | G7KVV4_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES78881 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 5e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g050560.1 |
Entrez Gene | 11437270 |
Publications ? help Back to Top | |||
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