PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g050560.1
Common NameMTR_7g050560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 316aa    MW: 36267.1 Da    PI: 10.3164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g050560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.81e-1814104299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fk+ + + +l++g l++p+kf+e++g  +  s  + l++++g +W+++l   k  g+++++kGWkeF++ + L  g  ++Fk+ ++s+f  +v+
  Medtr7g050560.1  14 FKIIL-AQNLQEGKLMMPRKFVEKYG--EGLSNAIYLKTPNGAKWKLNL--LKINGKIWFEKGWKEFAEHHSLAHGHLLLFKYLRNSRF--LVR 100
                      55553.56677778***********8..458899***************..999999***************************99999..*** PP

                      EE-S CS
               B3  96 vfrk 99 
                      +f+k
  Medtr7g050560.1 101 IFEK 104
                      *997 PP
2B350.44.1e-16192291199
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      f+ v+  s+v  + ++ +p+kf ++h +++k+++ ++ l   +   W  k+ +r + ++  + lt+GWk F+k+n+Lk+ D++ F+l++ +  +
  Medtr7g050560.1 192 FVVVMRASYVEHRFLVNIPRKFGNRHfDLDKKRG-DVYLVL-NEGIWPAKYLIRMTLKGphFDLTTGWKAFAKDNKLKVDDVCKFELISCTILT 283
                      788999********************96666555.777655.4567888886655544455**************************9778888 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      + v++fr+
  Medtr7g050560.1 284 FIVHIFRE 291
                      99999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-248105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-249105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.56512105IPR003340B3 DNA binding domain
CDDcd100171.53E-1712102No hitNo description
SMARTSM010192.9E-2113105IPR003340B3 DNA binding domain
PfamPF023623.6E-1614104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19180297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20188293IPR015300DNA-binding pseudobarrel domain
CDDcd100179.36E-19190290No hitNo description
PROSITE profilePS5086311.42192292IPR003340B3 DNA binding domain
PfamPF023628.8E-15192291IPR003340B3 DNA binding domain
SMARTSM010198.3E-15192292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASETLELKP IHFFKIILAQ NLQEGKLMMP RKFVEKYGEG LSNAIYLKTP NGAKWKLNLL  60
KINGKIWFEK GWKEFAEHHS LAHGHLLLFK YLRNSRFLVR IFEKSALEIN YPFQRVAAKN  120
VSNGQKRKAN SSFEFHQPCE IGSNSCVEVD KLNKVATLHH AGRESKGKQV LATKRVTALE  180
RAQSFKTCNP SFVVVMRASY VEHRFLVNIP RKFGNRHFDL DKKRGDVYLV LNEGIWPAKY  240
LIRMTLKGPH FDLTTGWKAF AKDNKLKVDD VCKFELISCT ILTFIVHIFR ETDNDNTNCS  300
ASQKFSQVKE EASQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g050560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691800.0AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622663.10.0B3 domain-containing transcription factor VRN1
TrEMBLG7KVV40.0G7KVV4_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES788810.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-27B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]