PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g039110.1
Common NameMTR_7g039110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 340aa    MW: 36420.6 Da    PI: 8.8291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g039110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09308333530
                      HHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                      hn+ Er+RRd+iN+++ +L++l+P++
  Medtr7g039110.1 308 HNQSERKRRDKINQRMKTLQKLVPNS 333
                      9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-8301335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.141303339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9307333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-7308335No hitNo description
PfamPF000105.7E-7308333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSQCVPSWDV DENPQPPPRS VSLRSNSNST NPHDVPMLDY DVAELTWENG QISMHGLGLP  60
KVPHKHPSTA GTTPSKETWE KPRGSGTLES IVNQATSFPH RGKSPFLAGG GVYGNMLVPW  120
LDPQRAAAIA AATAASNGMA VDALVPCSNT TKEQRTHAMD PVPRSGIGSC MVGGHTPVGS  180
CSAVVAATQD EGGILAASAA KRGRVAHVAG SGRDQSMSGS ATFGRQSQQV TLDTYDREFG  240
MTGFTSTSIA SMDNTSSEKQ CTRTTTIDDH DSVCHSRPPR EEADVDEKKR ENRKSSVSTK  300
RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKLLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316ERKRRD
2312317RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.119200.0leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g039110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0161580.0FP016158.2 Medicago truncatula chromosome 5 clone mth2-46i6, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626615.10.0transcription factor UNE10
TrEMBLA0A072TYQ00.0A0A072TYQ0_MEDTR; Transcription factor
STRINGXP_004514235.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-68bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]