PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g027190.1

Common Name

MTR_7g027190, RAM1

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRAS

Protein Properties

Length: 675aa MW: 74869.3 Da PI: 5.8908

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g027190.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	429.5	2.7e-131	297	673	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetsekn...........sseelaa 80 lv+lLl+cAeav++g+ la+++L +l+ ++p gd+mqR+a++fte L+arla + ++ +++ +ps+ s+++ e+l++ Medtr7g027190.1 297 LVHLLLACAEAVAKGEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSTkklAPSSLSSSSsssclstfpsnPMEVLKI 390 68*************************************************99444333332111333333333345555555444555555 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174 +++ ++++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ e+++etg+ L+++A++l++ Medtr7g027190.1 391 YQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIESVRETGRCLTELAHSLRI 480 599**************************************************************....***************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 pfef++ v ++ledl++++++ + gEalaVn v +lhr++ ++ ++L+++++ P++v++veqea+hn++ Fl rfleal+yysa+f Medtr7g027190.1 481 PFEFHP-VGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVP------GNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIF 567 **.7***************************9......444557************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 dsl+a++p es r+kvE+ ++++ei+n+vaceg+er+erhe+lekWr+ +e GFk vpls +a++q + ll ++ dgyr+ e++g+l+lgW Medtr7g027190.1 568 DSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGW 661 ****************************************************************************************** PP GRAS 363 kdrpLvsvSaWr 374 +dr+++++SaWr Medtr7g027190.1 662 QDRAIIAASAWR 673 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.368	271	653	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-129	297	673	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MINSLCGSSN SLKEKCLQPN SSNQTNTHSK KNATNSCGDL EQINVLTPQS LNLPSLKFDL 60 DGDVEVQSPD SSMWEAFFND HLDNDFMISS PIRNINPNSP QASTYNNCNY NYAQGMQIQS 120 LSGCSPPRFA SQIGSLNSNN QQKGKGLSPL HRVFNSPNNQ YMQHVENLSL PAIEEFLEDF 180 QGDVDHFSST KVSSECFDME TPISTILDSL TMQNSSSYGA SVNEESTLLH GGNSSSQISQ 240 ESDIYHQMGS MASASLSQAL QQERYQEKHQ KMQAQQQSLT VPIQIGIEQE QDSGLQLVHL 300 LLACAEAVAK GEYMLARRYL HQLNRVVTPL GDSMQRVASC FTESLSARLA ATLTTKSSST 360 KKLAPSSLSS SSSSSCLSTF PSNPMEVLKI YQIVYQACPY IKFAHFTANQ AIFEAFEAEE 420 RVHVIDLDIL QGYQWPAFMQ ALAARPGGAP FLRITGVGPC IESVRETGRC LTELAHSLRI 480 PFEFHPVGEQ LEDLKPHMFN RRVGEALAVN TVNRLHRVPG NHLGNLLSMI RDQAPNIVTL 540 VEQEASHNGP YFLGRFLEAL HYYSAIFDSL DATFPVESAP RAKVEQYIFA PEIRNIVACE 600 GEERIERHER LEKWRKIMEG KGFKGVPLSP NAVTQSRILL GLYSCDGYRL TEDKGCLLLG 660 WQDRAIIAAS AWRC*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MINSLCGSSN SLKEKCLQPN SSNQTNTHSK KNATNSCGDL EQINVLTPQS LNLPSLKFDL  60
DGDVEVQSPD SSMWEAFFND HLDNDFMISS PIRNINPNSP QASTYNNCNY NYAQGMQIQS  120
LSGCSPPRFA SQIGSLNSNN QQKGKGLSPL HRVFNSPNNQ YMQHVENLSL PAIEEFLEDF  180
QGDVDHFSST KVSSECFDME TPISTILDSL TMQNSSSYGA SVNEESTLLH GGNSSSQISQ  240
ESDIYHQMGS MASASLSQAL QQERYQEKHQ KMQAQQQSLT VPIQIGIEQE QDSGLQLVHL  300
LLACAEAVAK GEYMLARRYL HQLNRVVTPL GDSMQRVASC FTESLSARLA ATLTTKSSST  360
KKLAPSSLSS SSSSSCLSTF PSNPMEVLKI YQIVYQACPY IKFAHFTANQ AIFEAFEAEE  420
RVHVIDLDIL QGYQWPAFMQ ALAARPGGAP FLRITGVGPC IESVRETGRC LTELAHSLRI  480
PFEFHPVGEQ LEDLKPHMFN RRVGEALAVN TVNRLHRVPG NHLGNLLSMI RDQAPNIVTL  540
VEQEASHNGP YFLGRFLEAL HYYSAIFDSL DATFPVESAP RAKVEQYIFA PEIRNIVACE  600
GEERIERHER LEKWRKIMEG KGFKGVPLSP NAVTQSRILL GLYSCDGYRL TEDKGCLLLG  660
WQDRAIIAAS AWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-95	284	672	6	378	Protein SCARECROW
5b3h_A	2e-95	284	672	5	377	Protein SCARECROW
5b3h_D	2e-95	284	672	5	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g027190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN572683	0.0	JN572683.2 Medicago truncatula required for arbuscular mycorrhization 1 (RAM1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003622095.1	0.0	DELLA protein RGL2
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A145P7T2	0.0	A0A145P7T2_LOTJA; RAM1 GRAS protein
STRING	AES78313	0.0	(Medicago truncatula)
STRING	AES78316	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9470	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-93	RGA-like 1

Link Out ? help Back to Top
Phytozome	Medtr7g027190.1
Entrez Gene	11438339

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Wang E, et al. A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Curr. Biol., 2012. 22(23): p. 2242-6 [PMID:23122843] Gobbato E, et al. A GRAS-type transcription factor with a specific function in mycorrhizal signaling. Curr. Biol., 2012. 22(23): p. 2236-41 [PMID:23122845] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]