PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g026977.1
Common NameMTR_7g026977
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 357aa    MW: 39248.9 Da    PI: 7.1334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g026977.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068150172123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+  Fs+   L  H++ H
  Medtr7g026977.1 150 FSCTYCKAKFSTAQALGGHQNAH 172
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-5147179No hitNo description
PfamPF139124.1E-6150175IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASKSSTLSA TSQDQDDSSS HTKEIVNMKE NEDQAANSNS IKATDFVKLP RDDSVSKLKM  60
HEGSAFRPYQ SGSSSSLPNK NNEGKEDENK KHQSPNTNSN KSFDFTKLSK DHSLCKSKVQ  120
EHGFFSPIPA GSTSPFQHKN NEGKGDSRSF SCTYCKAKFS TAQALGGHQN AHRKERAFEK  180
QCQQRYDQNP LGLGQPPSFN PYFSYRSTLF TPYNYRLPGV RMESMIQKPP YTSAKITPHN  240
VGYGHGTLCL NDILNPSLVR SRNNRGAGIL GFGGATSSKI EDGNKIRAIL NYGDSFTNIA  300
SCSNSNKDKE IIVAPTSTAD DIHNQEPNNE EHSDSEPNNE EDSDSESSEL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g026977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447902.10.0uncharacterized protein LOC25497735
TrEMBLA0A072TWR60.0A0A072TWR6_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004499809.12e-94(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.15e-11C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]