PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g023560.1
Common NameMTR_7g023560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 185aa    MW: 20407.2 Da    PI: 9.4048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g023560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164062123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Medtr7g023560.1 40 FECKTCNRQFPSFQALGGHRASH 62
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.05E-838108No hitNo description
PfamPF139123.1E-133964IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274067IPR007087Zinc finger, C2H2
SMARTSM003550.164062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139126.6E-1085110IPR007087Zinc finger, C2H2
PROSITE profilePS501579.24586113IPR007087Zinc finger, C2H2
SMARTSM003550.586108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKRAREVDSI TMANCLMLLS RGSDQFEATY SSTTSNNRVF ECKTCNRQFP SFQALGGHRA  60
SHKKPRLMGE NIDGQLLHTP PKPKTHECSI CGLEFAIGQA LGGHMRRHRA ANMNGNKNMH  120
NSNNTMSCSS GGGGDSSIDS SQKMKARNKR VLVLDLDLNL TPFENDMEFL KIGKATANLI  180
DYFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.173950.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g023560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467500.0AC146750.32 Medicago truncatula clone mth2-16o6, complete sequence.
GenBankAC2454970.0AC245497.2 Medicago truncatula strain A17 clone mtrs-112g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621801.11e-137zinc finger protein ZAT11
TrEMBLG7KVQ21e-135G7KVQ2_MEDTR; C2H2-type zinc finger protein
STRINGAES780191e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-34C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]