PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g011630.1
Common NameMTR_7g011630, MtrDRAFT_AC155888g20v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 464aa    MW: 53135.8 Da    PI: 5.051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g011630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-194190255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Medtr7g011630.1 41 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACILRG 90
                     789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-314097No hitNo description
PfamPF008471.9E-134190IPR001471AP2/ERF domain
PROSITE profilePS5103219.5854198IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-194197IPR016177DNA-binding domain
SMARTSM003807.5E-3641104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-274197IPR001471AP2/ERF domain
PRINTSPR003677.4E-84253IPR001471AP2/ERF domain
PRINTSPR003677.4E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MTRKRKISET LVEDINPYET IKEWNEVMKE PSSLEKRSRK RFVGVRQRPS GRWVAEIKDT  60
IQKIRVWLGT FDTAEEAARA YDEAACILRG SNTRTNFLPC SKSSSRNHVL SSKITNLLFQ  120
KLKERNYPCG CGRSCEPLNC GKIQENEADA DKIAVAMSLP RPQNPLYCTK MQENVADTVK  180
TAVVMLQRPQ NPLYYDWSCK PLYYGKVQEN TADAVEIAVA MPQRPQNSLY CGHILSCGPQ  240
FKTISSPSCS SNSLFINQQQ KKQGNVYGNE STYFTNEQFI DFFDGPEEDC CTINSIEFSN  300
NSSAQIDCIT SSFESCLTEK DEFICKEKET TSSDERVEDI EENTGLSFNQ DFQFLDNVDD  360
AAMNYYSAFN IDHEDIEKHV ELEINDDSDE SSMLRNAMKR MKYERKFSAS LYAFNGIPEC  420
LKLKLESDNK MGREFSNELT NLEMACSKKK RMLIRRMNDT YNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g011630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558880.0AC155888.2 Medicago truncatula chromosome 7 clone mth2-30a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621303.10.0uncharacterized protein LOC11417839
TrEMBLA2Q3S30.0A2Q3S3_MEDTR; AP2/ERF domain transcription factor
STRINGAES775210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-24related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]