PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g488100.3

Common Name

MTR_6g488100

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 270aa MW: 29894.3 Da PI: 7.634

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g488100.3	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	189	227	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq Medtr6g488100.3 189 RKEKLGDRITALHQIVSPF-----GKTDTASVLLEAIGYIRFLQ 227 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.268	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-7	181	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.23E-5	187	231	No hit	No description
SuperFamily	SSF47459	4.32E-10	187	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNRGVVQSSP VQQMMASNPN WWNINNMRPP SPQPPPLFSS PSNFLNPNYA PTSSFLPFSS 60 WHENHQELPE PWSQQLMGGI VGEEDKIGMN QFQNQMLISQ APNASLVDVK QENSGNSYAY 120 GHGNEELNSC VTSFNNNNNM LDFTNNNSNI DVRHPPLDRS SECNSTASGG AMKKARVQQS 180 TTQATFKVRK EKLGDRITAL HQIVSPFGKT DTASVLLEAI GYIRFLQSQI EALSLPYLSN 240 GSGNTRQPQS VRINMVNYSL NLPHKNCHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.16805	0.0	flower\| leaf\| pod\| root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g488100.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136055	0.0	BT136055.1 Medicago truncatula clone JCVI-FLMt-17F9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013453116.1	0.0	transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	7e-53	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A072UMQ3	0.0	A0A072UMQ3_MEDTR; BHLH transcription factor-like protein
STRING	XP_004513012.1	1e-128	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr6g488100.3
Entrez Gene	25497378

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]