PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g086805.1
Common NameMTR_6g086805
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 346aa    MW: 39420.6 Da    PI: 5.341
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g086805.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.4e-34121032102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++++++++li+w  ++nsf+vld+ ef++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll+
  Medtr6g086805.1  12 FIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLK 96 
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i rkk+
  Medtr6g086805.1  97 NIVRKKH 103
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-538101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.75E-349101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-379101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGMEQNNVIA PFIMKTYHMV NEPNTDNLIK WGPSNNSFIV LDPLEFSHSL LPLFFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFANEWFLRG QKHLLKNIVR KKHVGGIGNG RNNNCYNNNN  120
YFNEVKFEDL EEDEAMVTEI MKLKEEQRNL EEELQGMNKR LETTEKRPQQ MMAFLCNVVE  180
DPQILSRILN ERESKKFVDK KKRRLISPVV TAAVTTSTSS ESSGMAMANS VKMEFEEDEV  240
TVGNNMMSSS TEVGFEIDYL HRVPPREVAP VGGWLGQTEF GQMVYGRDCG VSRMPELSPV  300
PAPMTWGENR SDSSSKKGGE GNFNEMAAEN SKLPPYPFSL LEGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-25910126129Heat shock factor protein 1
5d5v_B9e-25910126129Heat shock factor protein 1
5d5v_D9e-25910126129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199203KKKRR
2199204KKKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g086805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453094.10.0heat stress transcription factor C-1
SwissprotQ9LV522e-79HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A072UBW90.0A0A072UBW9_MEDTR; Heat shock transcription factor
STRINGXP_004512974.11e-164(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-79heat shock transcription factor C1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]