PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g084430.1 | ||||||||
Common Name | MTR_6g084430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 36958.4 Da PI: 7.6836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.7 | 1.3e-54 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+ k+++ +++ ++++ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ Medtr6g084430.1 5 LPPGFRFHPTDEELITHYLTMKISDASFTS-KAVAVVDLNKSEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFR 97 79*************************999.88***************988999**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrap+gek++Wvmheyrle Medtr6g084430.1 98 -GGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 .********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.395 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT HYLTMKISDA SFTSKAVAVV DLNKSEPWDL PGKASMGEKE 60 WYFFSVRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENKHHFRTSK DEWVVCRVFQ KSIATKKPQQ TSFSQPESPC DTTSIVNEFG 180 DVELPNLNGI TNSSSSCGFT NIIQGQTFNT HDDLNTNMNL TMNWPSSSHV PSLPWPSNLL 240 NPNNISVNSL LLKALQLRNY QQQREVAATN IHFAPYMPQQ GVISHHQLGT DPSNNSNDLS 300 ASSSKVLECM PQHQQEQPFN LDSIW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g084430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146563 | 0.0 | AC146563.33 Medicago truncatula chromosome 6 clone mth2-15b10, complete sequence. | |||
GenBank | AC186200 | 0.0 | AC186200.30 Medicago truncatula chromosome 6 clone mth2-78n6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003620480.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | G7KN39 | 0.0 | G7KN39_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES76698 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-106 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g084430.1 |
Entrez Gene | 11442568 |
Publications ? help Back to Top | |||
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