PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g084430.1
Common NameMTR_6g084430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 326aa    MW: 36958.4 Da    PI: 7.6836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g084430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-5451311129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+ k+++ +++  ++++ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++
  Medtr6g084430.1   5 LPPGFRFHPTDEELITHYLTMKISDASFTS-KAVAVVDLNKSEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFR 97 
                      79*************************999.88***************988999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfykgrap+gek++Wvmheyrle
  Medtr6g084430.1  98 -GGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131
                      .********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-643151IPR003441NAC domain
PROSITE profilePS5100560.3955151IPR003441NAC domain
PfamPF023656.2E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLTMKISDA SFTSKAVAVV DLNKSEPWDL PGKASMGEKE  60
WYFFSVRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHHFRTSK DEWVVCRVFQ KSIATKKPQQ TSFSQPESPC DTTSIVNEFG  180
DVELPNLNGI TNSSSSCGFT NIIQGQTFNT HDDLNTNMNL TMNWPSSSHV PSLPWPSNLL  240
NPNNISVNSL LLKALQLRNY QQQREVAATN IHFAPYMPQQ GVISHHQLGT DPSNNSNDLS  300
ASSSKVLECM PQHQQEQPFN LDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-57415719174NAC domain-containing protein 19
3swm_B4e-57415719174NAC domain-containing protein 19
3swm_C4e-57415719174NAC domain-containing protein 19
3swm_D4e-57415719174NAC domain-containing protein 19
3swp_A4e-57415719174NAC domain-containing protein 19
3swp_B4e-57415719174NAC domain-containing protein 19
3swp_C4e-57415719174NAC domain-containing protein 19
3swp_D4e-57415719174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g084430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465630.0AC146563.33 Medicago truncatula chromosome 6 clone mth2-15b10, complete sequence.
GenBankAC1862000.0AC186200.30 Medicago truncatula chromosome 6 clone mth2-78n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620480.10.0protein CUP-SHAPED COTYLEDON 1
TrEMBLG7KN390.0G7KN39_MEDTR; NAC transcription factor-like protein
STRINGAES766980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-106NAC domain containing protein 58
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]