PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g080300.1 | ||||||||
Common Name | MTR_6g080300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 93aa MW: 9670.78 Da PI: 7.5108 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 53.7 | 4.8e-17 | 51 | 92 | 3 | 45 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaA 45 ++rY+eC+kNh +s Ggh+vDG +Ef+++ +eegt +a+ CaA Medtr6g080300.1 51 TMRYRECQKNHVVSFGGHVVDGSCEFIAA-DEEGTLEAVICAA 92 689*************************9.999*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.4E-15 | 52 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-10 | 53 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.089 | 54 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MTQILFSSST ASSPDGGPAR SSRHRSISSH SKLTVVVDGR KGNGNGGFVL TMRYRECQKN 60 HVVSFGGHVV DGSCEFIAAD EEGTLEAVIC AA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g080300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148291 | 8e-81 | AC148291.22 Medicago truncatula clone mth2-14n3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615230.1 | 8e-29 | zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A072UB00 | 6e-61 | A0A072UB00_MEDTR; ZF-HD protein dimerization region protein | ||||
STRING | AES84922 | 3e-58 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 2e-15 | homeobox protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g080300.1 |
Entrez Gene | 25496766 |
Publications ? help Back to Top | |||
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