PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g047570.1
Common NameMTR_6g047570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 337aa    MW: 38216.6 Da    PI: 5.4964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g047570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10159204454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ + f  L  l+P++     kK++K ++L  +++Y+k+L
  Medtr6g047570.1 159 DHIMAERKRREKLTQNFIALAALVPNL-----KKVDKYSVLVDTIKYLKEL 204
                      699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.452155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-13159219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-8159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-10160208No hitNo description
SuperFamilySSF474599.81E-14160224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-8161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEINNTTMN VSSTNSWLSD LEMDEYNLFA EESNLNFLDT DVVEFLSHDI GNVFQEQNKQ  60
QCFTSGSTPK SLSNSSCYET NMELKTIDHS NKVNETFSPK LSPSNSSLQF QIPSFDNSPN  120
SPTTKSSQLC GFDPTLNSKQ NLETKTSKSK RSRTLHGQDH IMAERKRREK LTQNFIALAA  180
LVPNLKKVDK YSVLVDTIKY LKELKKRLII LEEQNEKTKI ESPIILTKPG LCNNDNSSSC  240
DESIDCVVDL PFQVEARILG KYMLIRIQCQ EHIGLLVKIM VEIQRFKLFV VNNSVLPFGD  300
SILDITIIAQ LDEGYNMCIK ELVKNLRMEA LKFMSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g047570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452170.10.0transcription factor bHLH19
TrEMBLA0A072UAR90.0A0A072UAR9_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES908101e-117(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]