PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g043890.1 | ||||||||
Common Name | MTR_6g043890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 343aa MW: 39861.2 Da PI: 8.385 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.6 | 2e-17 | 210 | 292 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ff ++++ + ++++lv+p +f+++h++ ee+ + + d + r+W+v l + ++ ++ lt+GW+eF+ n+Lk gD++ F l+ Medtr6g043890.1 210 FFACMIKKTHIERDLLVIPTEFVKTHMHMMEEGNAILFVD-QDRTWNVDLDLTLNK-QFALTSGWSEFCAHNNLKFGDVCAFLLH 292 8899999*******************77777777888888.89*******554444.499**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-17 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-15 | 12 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.601 | 14 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.78E-11 | 14 | 105 | No hit | No description |
SMART | SM01019 | 4.8E-5 | 15 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-17 | 204 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-17 | 205 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.675 | 210 | 306 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-14 | 210 | 292 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-9 | 210 | 306 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.19E-13 | 210 | 304 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 0.001 | 296 | 325 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MSSQELEHQN NGVHFFKIIL ASILQEGKLR VPINFARRHW HGITNPVTLR LPTMAQMNVT 60 WEKTSDYDVW FCNGWKEFAN YLSLRDSQLL VFRYRKKSLF DVIVFGKCGL EIKYPLRETC 120 DGSLKVTEDP SSSPGKRRKS PSPCVKVCKK MKINPEEQKE SKHEKKIFQS QAKFHNFKDM 180 NNGNSRDDIK EKSKVLYEKV NEKFSHDKDF FACMIKKTHI ERDLLVIPTE FVKTHMHMME 240 EGNAILFVDQ DRTWNVDLDL TLNKQFALTS GWSEFCAHNN LKFGDVCAFL LHKCKTTGWL 300 EFLKDCYLKE GDTCLLKMVE KACLCLILQF QEEAAKLDCV SC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g043890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636868.1 | 1e-138 | B3 domain-containing protein REM8 | ||||
TrEMBL | A0A072UAG2 | 0.0 | A0A072UAG2_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES91879 | 1e-137 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14023 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g043890.1 |
Entrez Gene | 25496315 |
Publications ? help Back to Top | |||
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