PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g043060.1 | ||||||||
Common Name | MTR_6g043060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 330aa MW: 37657 Da PI: 4.7044 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.1 | 4.6e-36 | 23 | 113 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F++k+y++++d++++e++sws++++sf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k + ++ weF++++F+k++k+ll+ Medtr6g043060.1 23 FIQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRILLPSYFKHNNFSSFIRQLNTYGFRKADPDR---------WEFANEKFTKDQKHLLK 107 9***************************************************************9999.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k Medtr6g043060.1 108 DIHRRK 113 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.5E-56 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.7E-38 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-34 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.6E-19 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.7E-32 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-19 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MNSAPQSSLV AAAGRSGGDM APFIQKTYDM VDDPTTDEIV SWSSDNKSFI VWNPPEFSRI 60 LLPSYFKHNN FSSFIRQLNT YGFRKADPDR WEFANEKFTK DQKHLLKDIH RRKPIHSHSH 120 PPASAIDPER AALEQEIEML SLEKNALQSK LLSYDYLETE KLQLEDFQRR LDGMEQRQAN 180 LQTFFDKALQ DSFIVELLSR KIESMDLAAD NKKRRLSQVD RIQPVVEGIF LDNPCSFRLE 240 FGNVFYQDIS NKLRLELSLA DLDMNFISGS TQGSNEDEES LQKNISESKG AGDNVQVEAA 300 ARHGANDVFW EQFLTERPCC SDNEEAIST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-20 | 11 | 112 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-20 | 11 | 112 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-20 | 11 | 112 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12448 | 0.0 | leaf| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g043060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146585 | 0.0 | AC146585.18 Medicago truncatula clone mth2-68o3, complete sequence. | |||
GenBank | AY224188 | 0.0 | AY224188.1 Medicago truncatula adenosylhomocysteinase (AHC1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452015.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 1e-96 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A072UAD0 | 0.0 | A0A072UAD0_MEDTR; Heat shock transcription factor A8 | ||||
STRING | AES62785 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 4e-99 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g043060.1 |
Entrez Gene | 25496281 |
Publications ? help Back to Top | |||
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