PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g043060.1
Common NameMTR_6g043060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 330aa    MW: 37657 Da    PI: 4.7044
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g043060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.6e-36231132101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++d++++e++sws++++sf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k + ++         weF++++F+k++k+ll+
  Medtr6g043060.1  23 FIQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRILLPSYFKHNNFSSFIRQLNTYGFRKADPDR---------WEFANEKFTKDQKHLLK 107
                      9***************************************************************9999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Medtr6g043060.1 108 DIHRRK 113
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.5E-5619112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3820112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3420112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3223112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNSAPQSSLV AAAGRSGGDM APFIQKTYDM VDDPTTDEIV SWSSDNKSFI VWNPPEFSRI  60
LLPSYFKHNN FSSFIRQLNT YGFRKADPDR WEFANEKFTK DQKHLLKDIH RRKPIHSHSH  120
PPASAIDPER AALEQEIEML SLEKNALQSK LLSYDYLETE KLQLEDFQRR LDGMEQRQAN  180
LQTFFDKALQ DSFIVELLSR KIESMDLAAD NKKRRLSQVD RIQPVVEGIF LDNPCSFRLE  240
FGNVFYQDIS NKLRLELSLA DLDMNFISGS TQGSNEDEES LQKNISESKG AGDNVQVEAA  300
ARHGANDVFW EQFLTERPCC SDNEEAIST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-201111219129Heat shock factor protein 1
5d5v_B2e-201111219129Heat shock factor protein 1
5d5v_D2e-201111219129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.124480.0leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g043060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465850.0AC146585.18 Medicago truncatula clone mth2-68o3, complete sequence.
GenBankAY2241880.0AY224188.1 Medicago truncatula adenosylhomocysteinase (AHC1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452015.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-96HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A072UAD00.0A0A072UAD0_MEDTR; Heat shock transcription factor A8
STRINGAES627850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.14e-99HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]