PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g027390.1

Common Name

MTR_6g027390

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

WOX

Protein Properties

Length: 301aa MW: 31908.2 Da PI: 7.0411

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g027390.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.8	2.4e-15	30	90	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Medtr6g027390.1 30 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 90 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.5	8e-35	29	92	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Medtr6g027390.1 29 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 92 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.42E-14	24	98	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-9	24	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.337	26	91	IPR001356	Homeobox domain
SMART	SM00389	1.7E-6	28	95	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-13	30	90	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEDQQQNQHV QSQSSNTNNP NNTEKSETVR SRWTPKPEQI LILESIFNSG MVNPPKDETV 60 RIRKLLEKFG AVGDANVFYW FQNRRSRSRR RQRQMQAAAQ LGGGSTNANP YHQYQCSTNS 120 TSLSLGTALG FGGSSTFTMN SSSCSTYNNN FSGSSSSCAG GVGAGAGVGV GLGLGAGAGG 180 EEGFGGLYLG STQINLPQME NTSAASSIMQ PSDHASNFNY YPGGIGYGGS NVSGVITVFI 240 NGVPTEMPRG TAIDMKTMFG EDVILVHSSG VSVPTNEFGF LMQNLQHGES YYLVSKQAQA 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g027390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451508.1	0.0	WUSCHEL-related homeobox 11 isoform X1
Swissprot	Q8GY25	4e-71	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A072U832	0.0	A0A072U832_MEDTR; Putative transcription factor Homobox-WOX family
STRING	XP_004489665.1	1e-116	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	8e-36	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Medtr6g027390.1
Entrez Gene	25495807

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]