![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr6g026800.1 | ||||||||
Common Name | MTR_6g026800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 322aa MW: 35634.9 Da PI: 9.5695 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47 | 5.6e-15 | 251 | 301 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r++kNRe+A rsR+R++a+++eLe kv Le+eN++L+ +e++kev Medtr6g026800.1 251 RRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRR-QNEMEKEV 301 79****************************************5.55556655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.4E-15 | 245 | 300 | No hit | No description |
SMART | SM00338 | 3.2E-14 | 247 | 315 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.576 | 249 | 294 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.60E-12 | 251 | 305 | No hit | No description |
SuperFamily | SSF57959 | 8.75E-11 | 251 | 299 | No hit | No description |
Pfam | PF00170 | 4.0E-12 | 251 | 297 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 254 | 269 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MGSQGGTVSE SKTLPLSRSG SLYNLTLDEV QNHLGNLGKP LGSMNLDELL KSVWSVEAGE 60 VSDFGGSDVA ATAGGNMQHN QLGGFNSQES LTLSGDLSKK TVDEVWKDMQ GKKRGVDRDR 120 KSREKQQTLG EMTLEDFLVK AGVVGESFHG KESGLLRVDS NEDSRQKVSH GLHWMQYPVH 180 SVQQQQHQYE KHTMPGFAAV HAIQQPFQVA GNQALDAAIS PSSLMGTLSD TQTLGRKRVA 240 SGIVVEKTVE RRQKRMIKNR ESAARSRARR QAYTQELELK VSRLEEENER LRRQNEMEKE 300 VPTAPPPEPK NQLRRTNSAS F* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr6g026800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC146910 | 0.0 | AC146910.16 Medicago truncatula chromosome 6 clone mth2-59i21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618910.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9LES3 | 1e-103 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | G7KP64 | 0.0 | G7KP64_MEDTR; BZIP transcription factor | ||||
STRING | AES75128 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1320 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56850.1 | 6e-85 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr6g026800.1 |
Entrez Gene | 11416876 |
Publications ? help Back to Top | |||
---|---|---|---|
|