PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g015455.1 | ||||||||
Common Name | MTR_6g015455 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 1514aa MW: 171572 Da PI: 7.0242 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.8e-15 | 5 | 49 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W++eEde l ++v+++G ++W+ ++ ++ gR++k+c++ w + Medtr6g015455.1 5 KGPWSPEEDEALQKLVEKHGARNWSILSKSIP-GRSGKSCRLPWCN 49 79******************************.********98877 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.2e-17 | 57 | 99 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T+eEde +++a++++G++ W+tIar ++ g t++ +k++w+ Medtr6g015455.1 57 RGAFTPEEDEAIIRAHARFGNK-WATIARLLP-GQTDNAVKNHWN 99 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.367 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-28 | 2 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 4 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 6 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-11 | 7 | 49 | No hit | No description |
Pfam | PF13921 | 1.9E-14 | 8 | 66 | No hit | No description |
SMART | SM00717 | 5.1E-13 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.089 | 57 | 106 | IPR017930 | Myb domain |
CDD | cd00167 | 1.50E-9 | 59 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 59 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50104 | 19.289 | 110 | 191 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SMART | SM00255 | 5.5E-21 | 111 | 246 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52200 | 1.1E-24 | 113 | 194 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.40.50.10140 | 6.0E-16 | 114 | 193 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 5.3E-25 | 114 | 195 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 6.23E-62 | 551 | 820 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 2.1E-12 | 577 | 736 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 3.6E-36 | 578 | 830 | IPR002182 | NB-ARC |
SMART | SM00382 | 6.7E-4 | 588 | 728 | IPR003593 | AAA+ ATPase domain |
PRINTS | PR00364 | 3.4E-22 | 591 | 606 | No hit | No description |
PRINTS | PR00364 | 3.4E-22 | 668 | 682 | No hit | No description |
PRINTS | PR00364 | 3.4E-22 | 761 | 775 | No hit | No description |
SuperFamily | SSF46785 | 2.31E-13 | 797 | 903 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 1.53E-25 | 917 | 1197 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.8E-15 | 938 | 1195 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 3.4E-22 | 1071 | 1087 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1514 aa Download sequence Send to blast |
MDRIKGPWSP EEDEALQKLV EKHGARNWSI LSKSIPGRSG KSCRLPWCNQ LSPQVERGAF 60 TPEEDEAIIR AHARFGNKWA TIARLLPGQT DNAVKNHWNI TLKHKCSSII MDEVFLSFRG 120 EDTRSSFTSH LHSSLQKAGI KVFMDDDSLQ RGDHISTSLL QSIDRSQISL IVFSTNYAGS 180 RWCLEELVQI MKCHRFDVPH SSSHELSSIF VYLPSLRSLW VECSSERQLS HDAAIILDAL 240 HTINRKELEP TATTSQVSKH SLKSLLIQIG MNCQATNILK DIILQNIDVN RSGGCLLPGD 300 SYPNWLTFLS EGSSVTLEVP QVEGRNLKTM MCIVYTSTPD NITSSGLKNV LVKNYTKATI 360 QLYKSEALAS FEDEEALRVV SSIEPGNKVE VVVVFENSFI VKKTAVYLVY DEPSVKRFST 420 EEEPNDDFNQ NRKKKNRDSL QPSLAMSSFT ITFVSKVVTS YFSPICWICI LETVDQFLKG 480 VWKSPRSKLH RRGVCRNHGR QHPDTEIPRK HSSVGRDNAL LYAEAAVRTS DTPLIHLIRN 540 ENEAIKDENV TRLLDKIDLF IANNPVGVES RMLDMIQLLD KDIEQSNDVI LLGMWGMGGV 600 GKTTIAKAIY NKIGRDFEGR SFLANIREVW ERNFGQVELQ EQLLFDINKE MTTKIQNIES 660 GKNILKDRLW HKRVLIVLDD VNTLEQMNAL CGSSKWFGSG SRIIITTRDK HILSRNRVSQ 720 VFKMKHLDEN ESIELFSWHA FKNATPTKDF AEISRDVVEY SGGLPLALEV LGSYLLDRSV 780 IEWQCVLEKL RRIPNNQVQK KLKISYDALN EDIEKEIFLN IACFFIDMDT NDVTHILNGC 840 GLFAEIGISI LIERSLVTVD AKDRLGMHDL LRDMGREIIR EESPEVFEER CRLWFHEDVL 900 DVLSKQTGTK SIKGLALKLP RANAKCLSTK AFKEMTTRLR LLQLDGVKLD GDFEILSRNL 960 RWLCWNGFPL THIPTDFYRE SLVSIELENS NVKRVWKEAQ MMEKLKILNH SHSHCLTHTP 1020 DFSYLPNLEK LVLKDCSMLS EVSTSIGHLN KILLINLEDC ISLCSLPRSI YKLKSLKTLI 1080 LSGCIMIDKL EEDLEQMESL TTLLANNTAI KRVPFSVVRS KSIGYISLCG HEGFSSDVFP 1140 SIIWSWMSPT NDLPPLFQTS NIMSSLVPLD VPHSSSHELS SMSQYLPSLR SLWMECSSEL 1200 QLSHDAAIIL DALYATNYKE LEQTASTSQV SIMTTSTSQV SKHSSKSLLI QIGKNCQVTN 1260 ILKGIILQNM DASWCGGSLL PGDSYPYWLA FNSEGSSVTF EVPQVKGRTL KKVMICIVYS 1320 STLDNITSDG LTSLLVKNYT KATIQLYKRE AAVSFEDEEG ERVVSSIEAG NKVEIVVVFK 1380 NGFIVKKTAV YLIYDEPIGE TMKQCHARTY KNVNVCSGDK TESFEREVSS HAEEKNQPIV 1440 SSDEENEGFV RRVYLAQDKN EPIVCSAEEK EGFVRKVSPQ VAPIDDLKHN KKKKILKRRW 1500 KTVKEWLDKY WCC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-35 | 4 | 105 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-35 | 4 | 105 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g015455.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024641804.1 | 0.0 | TMV resistance protein N, partial | ||||
TrEMBL | A0A072UH02 | 0.0 | A0A072UH02_MEDTR; Disease resistance protein (TIR-NBS-LRR class), putative | ||||
STRING | XP_004489498.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45050.2 | 9e-71 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g015455.1 |
Entrez Gene | 25495369 |
Publications ? help Back to Top | |||
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