PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g015455.1
Common NameMTR_6g015455
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 1514aa    MW: 171572 Da    PI: 7.0242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g015455.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-15549146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W++eEde l ++v+++G ++W+  ++ ++ gR++k+c++ w +
  Medtr6g015455.1  5 KGPWSPEEDEALQKLVEKHGARNWSILSKSIP-GRSGKSCRLPWCN 49
                     79******************************.********98877 PP
2Myb_DNA-binding52.89.2e-175799145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg++T+eEde +++a++++G++ W+tIar ++ g t++ +k++w+
  Medtr6g015455.1 57 RGAFTPEEDEAIIRAHARFGNK-WATIARLLP-GQTDNAVKNHWN 99
                     89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.367155IPR017930Myb domain
SuperFamilySSF466892.77E-28298IPR009057Homeodomain-like
SMARTSM007175.7E-13453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-23658IPR009057Homeodomain-like
CDDcd001672.81E-11749No hitNo description
PfamPF139211.9E-14866No hitNo description
SMARTSM007175.1E-1356104IPR001005SANT/Myb domain
PROSITE profilePS5129421.08957106IPR017930Myb domain
CDDcd001671.50E-95999No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2159105IPR009057Homeodomain-like
PROSITE profilePS5010419.289110191IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002555.5E-21111246IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522001.1E-24113194IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101406.0E-16114193IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015825.3E-25114195IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525406.23E-62551820IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.1E-12577736IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.6E-36578830IPR002182NB-ARC
SMARTSM003826.7E-4588728IPR003593AAA+ ATPase domain
PRINTSPR003643.4E-22591606No hitNo description
PRINTSPR003643.4E-22668682No hitNo description
PRINTSPR003643.4E-22761775No hitNo description
SuperFamilySSF467852.31E-13797903IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520581.53E-259171197IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-159381195IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003643.4E-2210711087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1514 aa     Download sequence    Send to blast
MDRIKGPWSP EEDEALQKLV EKHGARNWSI LSKSIPGRSG KSCRLPWCNQ LSPQVERGAF  60
TPEEDEAIIR AHARFGNKWA TIARLLPGQT DNAVKNHWNI TLKHKCSSII MDEVFLSFRG  120
EDTRSSFTSH LHSSLQKAGI KVFMDDDSLQ RGDHISTSLL QSIDRSQISL IVFSTNYAGS  180
RWCLEELVQI MKCHRFDVPH SSSHELSSIF VYLPSLRSLW VECSSERQLS HDAAIILDAL  240
HTINRKELEP TATTSQVSKH SLKSLLIQIG MNCQATNILK DIILQNIDVN RSGGCLLPGD  300
SYPNWLTFLS EGSSVTLEVP QVEGRNLKTM MCIVYTSTPD NITSSGLKNV LVKNYTKATI  360
QLYKSEALAS FEDEEALRVV SSIEPGNKVE VVVVFENSFI VKKTAVYLVY DEPSVKRFST  420
EEEPNDDFNQ NRKKKNRDSL QPSLAMSSFT ITFVSKVVTS YFSPICWICI LETVDQFLKG  480
VWKSPRSKLH RRGVCRNHGR QHPDTEIPRK HSSVGRDNAL LYAEAAVRTS DTPLIHLIRN  540
ENEAIKDENV TRLLDKIDLF IANNPVGVES RMLDMIQLLD KDIEQSNDVI LLGMWGMGGV  600
GKTTIAKAIY NKIGRDFEGR SFLANIREVW ERNFGQVELQ EQLLFDINKE MTTKIQNIES  660
GKNILKDRLW HKRVLIVLDD VNTLEQMNAL CGSSKWFGSG SRIIITTRDK HILSRNRVSQ  720
VFKMKHLDEN ESIELFSWHA FKNATPTKDF AEISRDVVEY SGGLPLALEV LGSYLLDRSV  780
IEWQCVLEKL RRIPNNQVQK KLKISYDALN EDIEKEIFLN IACFFIDMDT NDVTHILNGC  840
GLFAEIGISI LIERSLVTVD AKDRLGMHDL LRDMGREIIR EESPEVFEER CRLWFHEDVL  900
DVLSKQTGTK SIKGLALKLP RANAKCLSTK AFKEMTTRLR LLQLDGVKLD GDFEILSRNL  960
RWLCWNGFPL THIPTDFYRE SLVSIELENS NVKRVWKEAQ MMEKLKILNH SHSHCLTHTP  1020
DFSYLPNLEK LVLKDCSMLS EVSTSIGHLN KILLINLEDC ISLCSLPRSI YKLKSLKTLI  1080
LSGCIMIDKL EEDLEQMESL TTLLANNTAI KRVPFSVVRS KSIGYISLCG HEGFSSDVFP  1140
SIIWSWMSPT NDLPPLFQTS NIMSSLVPLD VPHSSSHELS SMSQYLPSLR SLWMECSSEL  1200
QLSHDAAIIL DALYATNYKE LEQTASTSQV SIMTTSTSQV SKHSSKSLLI QIGKNCQVTN  1260
ILKGIILQNM DASWCGGSLL PGDSYPYWLA FNSEGSSVTF EVPQVKGRTL KKVMICIVYS  1320
STLDNITSDG LTSLLVKNYT KATIQLYKRE AAVSFEDEEG ERVVSSIEAG NKVEIVVVFK  1380
NGFIVKKTAV YLIYDEPIGE TMKQCHARTY KNVNVCSGDK TESFEREVSS HAEEKNQPIV  1440
SSDEENEGFV RRVYLAQDKN EPIVCSAEEK EGFVRKVSPQ VAPIDDLKHN KKKKILKRRW  1500
KTVKEWLDKY WCC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-3541053104C-Myb DNA-Binding Domain
1msf_C3e-3541053104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g015455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641804.10.0TMV resistance protein N, partial
TrEMBLA0A072UH020.0A0A072UH02_MEDTR; Disease resistance protein (TIR-NBS-LRR class), putative
STRINGXP_004489498.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.29e-71Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]