PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g011860.1
Common NameMTR_6g011860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 392aa    MW: 44591.2 Da    PI: 7.3347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g011860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.2e-54151411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l+pGfrFhPtdeelv +yLk+k+++k+l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d++++s
  Medtr6g011860.1  15 LMPGFRFHPTDEELVGFYLKRKIQQKSLPI-ELIKQVDIYKHDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYS 107
                      689***************************.89***************8888999*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++g+ +glkk+Lvfykgra kg ktdW+mhe+rl
  Medtr6g011860.1 108 SDGKCIGLKKSLVFYKGRAAKGMKTDWMMHEFRL 141
                      ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5813173IPR003441NAC domain
PROSITE profilePS5100556.34415173IPR003441NAC domain
PfamPF023654.2E-2617141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEERTEMDIN KVDDLMPGFR FHPTDEELVG FYLKRKIQQK SLPIELIKQV DIYKHDPWDL  60
PKLASSGEKE WYFYCPRDRK YRNSSRPNRV TRAGFWKATG TDRPIYSSDG KCIGLKKSLV  120
FYKGRAAKGM KTDWMMHEFR LPCISDSNSP PKKFSDKSFS PNDSWAICRI FKKTNSLSMV  180
QKALSHPWIS QLPGSMVSEL LTQTTNINQF CSENNISCTT IEQGSSAGTN LQINKHDIQQ  240
VSNTINNFSA SDFPNYKPIN NINTISKSSQ IQVPNGDIID NLMFYTLDAN GSTKCTIDDS  300
SILSNTNYIG FEDANNQYNG FSISLPQDMQ PNIVNIQDQM QLNQWENLGR TIEFPFNLSP  360
SFDALRTSVT WDSPPCTSEM STTFVTSKCY T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5511761171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.87490.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g011860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4551951e-162DQ455195.1 Medicago truncatula cDNA-AFLP fragment BC41M32_125 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450964.10.0protein FEZ isoform X2
SwissprotQ9ZVH06e-99FEZ_ARATH; Protein FEZ
TrEMBLA0A072U5H50.0A0A072U5H5_MEDTR; NAC domain class transcription factor
STRINGXP_004489492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.16e-94NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]