PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g007647.2 | ||||||||
Common Name | MTR_6g007647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 29199.3 Da PI: 4.3839 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.8e-21 | 33 | 86 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e++++LAkklgL+ rqV vWFqNrRa++k Medtr6g007647.2 33 KKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 86 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 137.3 | 4.9e-44 | 32 | 123 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv++LE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l + ++++ke+e+L++e+ Medtr6g007647.2 32 EKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSINKENEKLKSEVV 123 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 18.625 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-20 | 31 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-20 | 31 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-18 | 33 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.12E-19 | 33 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 34 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.6E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.6E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-18 | 88 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMSMEEGSKR RPFFSSPDEL YDEEYYEEQS PEKKRRLTSE QVHMLEKSFE EENKLEPERK 60 TQLAKKLGLQ PRQVAVWFQN RRARWKTKQL ERDYDVLKSS YDSLLSTYDS INKENEKLKS 120 EVVSLNEKLQ VQAKDMLEEP LSEKKADPLP VDIAQIFSIK VDDHMSSGSV GSAVVDESSP 180 RVVGVIVDSV DSYFPADNYA GCVAPIERVQ SEEDDGSDDG RNYFDVFVAS ETEQHNHEEG 240 EALNWWGNMY YVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4475 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g007647.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146070 | 0.0 | BT146070.1 Medicago truncatula clone JCVI-FLMt-14A14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450824.2 | 1e-180 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 6e-88 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A072U576 | 0.0 | A0A072U576_MEDTR; Homeobox associated leucine zipper protein | ||||
TrEMBL | A0A072U6Z4 | 0.0 | A0A072U6Z4_MEDTR; Homeobox associated leucine zipper protein | ||||
STRING | XP_004489298.1 | 1e-158 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-81 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g007647.2 |
Entrez Gene | 25495188 |
Publications ? help Back to Top | |||
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