PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g093540.1 | ||||||||
Common Name | MTR_5g093540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 28835.2 Da PI: 8.9733 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.6 | 4.9e-08 | 158 | 182 | 2 | 26 |
--SS-EEEEEEE--TT-SS-EEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYr 26 dDgynW+KY K+ k+ e+ rsYY+ Medtr5g093540.1 158 DDGYNWKKYEEKVAKEGENQRSYYK 182 8***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-6 | 153 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-9 | 154 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-6 | 157 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.969 | 158 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-5 | 158 | 183 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MPIRISNRLI LINHWRILGF FSSIIGFTSY AFSSSFNHLY GKWNFIKIII YTLVSFSISS 60 MMLFLKKWKL SRRFLLKAHL GSMISCAAFA LMSFCLSRQI DLGFETDLNF FLGILTVQLM 120 KINLMLSIVS LYIEIDAADS NRNEFQQNLS LRRRVNHDDG YNWKKYEEKV AKEGENQRSY 180 YKYGEIIETL YKGTHNHCKP TSSMKRNSSS EYLYSLLPSE TGPIDLLDQS FGSEQLDSDE 240 EPVKSSVSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g093540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT573504 | 1e-132 | CT573504.2 Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615935.1 | 1e-137 | uncharacterized protein LOC11415730 | ||||
TrEMBL | G7K8M1 | 0.0 | G7K8M1_MEDTR; WRKY family transcription factor | ||||
STRING | AET00574 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14743 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.1 | 4e-11 | WRKY DNA-binding protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g093540.1 |
Entrez Gene | 11436647 |
Publications ? help Back to Top | |||
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