PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g089750.1
Common NameMTR_5g089750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SRS
Protein Properties Length: 468aa    MW: 49225 Da    PI: 8.2018
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g089750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.12.7e-652444043154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 
                       gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrer + +a+++  a   +  +++ +k++r     +++++s+t++s++
  Medtr5g089750.1 244 GGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLSSTATTTVVAGGGSsgSTSGAKKPRL---IASQTTSHTSTSNT 334
                      5789**********************************************999999888777766224444555554...46677788899999 PP

           DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +++++++t+s          +P +v+++avf+cvrv+svddg++e+aYq++v+igGhvfkG+Lyd+G+e+
  Medtr5g089750.1 335 TPPRSFDTTSshqdagfkdsMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVEN 404
                      9999999999999******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.5E-61246403IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-26248290IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.6E-28355402IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTEEENVEKA KLTVVVVATI TAPTATATAT ATAAEAETTR NPSENNNTRI IRFTFVATTR  60
RLPSDSGAFA DWAPTNSSTT LRAAAAPEDL SLGFNAAPTA GNAGPSTGPT TGLYNSSRSI  120
NYGPEMGMFV VAPSSFHHHH HNNNHHEALM SDPHSLNPAT ALGVGVIPLL TASPCLENEN  180
MLNSRRNQQG IQFWHEQHHQ QQQQQSPHSH YLKKQQGFLD HHNTSPTNLV HGGGLTASGT  240
SSGGGTTTCQ DCGNQAKKDC SNRRCRTCCK SRGFDCPTHV KSTWVPAARR RERLSSTATT  300
TVVAGGGSSG STSGAKKPRL IASQTTSHTS TSNTTPPRSF DTTSSHQDAG FKDSMPGQVR  360
APAVFKCVRV TSVDDGKDEY AYQAVVKIGG HVFKGFLYDH GVENREVYPN LSELHLGGGG  420
GNNNGGANRN GVSSSSPMMD PSHDVYAAAS SGGGGLLGGS AYGNQIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.169990.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g089750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621260.0CR962126.2 Medicago truncatula chromosome 5 clone mth2-143k7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640860.10.0protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK95e-81LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLG7K3570.0G7K357_MEDTR; Lateral root primordium (LRP)-like protein
STRINGAET002290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.42e-78Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]