PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g088060.1 | ||||||||
Common Name | MTR_5g088060, MTR_5g488160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 462aa MW: 51059.5 Da PI: 8.7674 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 271 | 317 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT++E++l++++ k++G+g+Wk I++++ ++t+ q+ s+ qky Medtr5g088060.1 271 KGHWTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKY 317 789*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.173 | 266 | 322 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-15 | 270 | 322 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-11 | 270 | 320 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 271 | 316 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-14 | 271 | 317 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.3E-15 | 272 | 321 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.45E-10 | 274 | 318 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MVRIRGGEQR KRVDEKSVDV PVLVVGTKSS PALSDAQTPK PINHVEKLSV PSVGQVAPRA 60 PSVQKSNGSG NFNLKNKMPS PRSRKPGPKR NRNTNGTPHF PVATMPYPNG ENPKHVSPAA 120 AGQGFTPPAH AIDAKHVQPP VQEDLNAYAV NYPNGRPNIQ EQGDHVNHGR HHQRPFPAKA 180 NMPMQHKSME GRKSIQSSLL QIDLNESASA QDPSEHSMEQ QQEKTGTNID ESGHAVAILN 240 SNDNSVETLN SNENNLIQAE SVPEESHAPR KGHWTEDEHK LFLKGLKKHG KGCWKDISKE 300 FVVTKTPTQI ASHAQKYFIH QNVKDIEKKE KKRKSIHDTT LNKNDTLVTV AVEQRDEIPS 360 VELQSVIPPQ GMQQTQTQQN EISPMLCLLP ISSTIPSVQQ QNELTPVVTA PMEQQHETPA 420 ILNNKDNENL QTQLVLLYPI GSTLPDMNKL EKMCNLLAKE L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g088060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124972 | 0.0 | AC124972.41 Medicago truncatula clone mth2-24j4, complete sequence. | |||
GenBank | AC130803 | 0.0 | AC130803.61 Medicago truncatula clone mth2-10g3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024639128.1 | 1e-177 | transcription factor MYB1R1 | ||||
Refseq | XP_024639181.1 | 1e-177 | transcription factor MYB1R1 | ||||
TrEMBL | G7K310 | 0.0 | G7K310_MEDTR; MYB-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AET00075 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16911 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 5e-12 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g088060.1 |
Entrez Gene | 11421447 | 25495062 |
Publications ? help Back to Top | |||
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