PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g080030.1 | ||||||||
Common Name | MTR_5g080030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | YABBY | ||||||||
Protein Properties | Length: 413aa MW: 47572.7 Da PI: 5.3278 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 27.6 | 9.1e-09 | 172 | 244 | 91 | 163 |
YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvP...saynrfikeeiqrikasnPdishreafsaaaknWahf 163 + + + + +e + v+++p ++ kr+ +P s yn f+k+e r+ka+ Pd+ r +a W + Medtr5g080030.1 172 YS---SQITGIGYQEFQVVQQAPSKNKEKKKRRGAPigqSGYNIFLKQECARLKANHPDVGGRKIIDMAIDAWNKL 244 22...222234678888999999999999999999988899****************************9999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51011 | 16.635 | 33 | 130 | IPR001606 | ARID DNA-binding domain |
SMART | SM01014 | 1.2E-7 | 37 | 126 | No hit | No description |
SMART | SM00501 | 8.2E-7 | 41 | 131 | IPR001606 | ARID DNA-binding domain |
Gene3D | G3DSA:1.10.150.60 | 1.6E-15 | 44 | 128 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF46774 | 6.67E-17 | 44 | 131 | IPR001606 | ARID DNA-binding domain |
Pfam | PF01388 | 8.3E-14 | 44 | 126 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF47095 | 6.55E-11 | 193 | 263 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 1.3E-7 | 202 | 272 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 9.478 | 203 | 271 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-8 | 207 | 272 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 7.34E-7 | 208 | 262 | No hit | No description |
Pfam | PF00505 | 5.9E-10 | 208 | 267 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 4.06E-8 | 268 | 339 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.3E-6 | 274 | 342 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 0.0051 | 279 | 347 | IPR009071 | High mobility group box domain |
Pfam | PF09011 | 3.9E-5 | 280 | 343 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 6.55E-6 | 280 | 342 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MEEGNELVME MVPYENENEI ISSMEEGKEL EMELEMVPYY TLTESFYRKL KELLDPSGFN 60 LIYDVRKTSL DLYLFYLEVT KRGGYHQVDQ EKKWGEVVSA LKLEGNNATL CDQLEKLYKE 120 LLYKFETLYF YRSPATGSNT GPVERNQNST TSLSQLMDDQ DYLKARKISE HYSSQITGIG 180 YQEFQVVQQA PSKNKEKKKR RGAPIGQSGY NIFLKQECAR LKANHPDVGG RKIIDMAIDA 240 WNKLSDNEKR PYEEASMKIK EEVKEAPTNN KEKKKHRGVP RGQKSAYQIF LKHECARLKA 300 DHQFQGDRKL KAIDAWKMMS PLEKLPYEEE SMKIKEEIKA AMIQKSTEDL NRDEERPIVC 360 GDYYSVTSQP LSNDSFGNNA AVDLTEKVSE DPFFPGDLND HHLLDFPSGE PK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 200 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g080030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR954190 | 1e-146 | CR954190.2 Medicago truncatula chromosome 5 clone mth2-17o13, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616418.1 | 0.0 | high mobility group B protein 10 isoform X1 | ||||
TrEMBL | G7KBS3 | 0.0 | G7KBS3_MEDTR; ARID/bright DNA-binding domain protein | ||||
STRING | AES99376 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12432 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g080030.1 |
Entrez Gene | 11442145 |
Publications ? help Back to Top | |||
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