PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g079500.1

Common Name

MTR_5g079500

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 312aa MW: 34516.3 Da PI: 5.1028

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g079500.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.5e-10	232	274	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Medtr5g079500.1 232 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 274 569*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-12	222	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-13	223	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.281	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-11	226	278	No hit	No description
SMART	SM00353	1.0E-11	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-7	234	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MALANNNILH CVFDETTMEI NSVMSHKKSM IEEEDGSQST NGLSNDSASA SAITNSPTLC 60 RKSHVYNNNT SYELEEESLI NFKGNDEYYN NLMQGSESLL SFQHSWMVSN ENNLQQWNNA 120 SPKSTTNLCM VQGFNSFETS SGSYGSMFNS VKEKQNGESS CGWLYSEPNV PCDDDDDDDS 180 LIKESETHES VLKKRSSMGG NMQPTNAKKP CTAASKKEKH KSNPSKDPQS VAAKNRRERI 240 SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQLQVKVL AADEFWPVNG GKAPDIGQVK 300 QAIDAILSSQ R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g079500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT573216	0.0	CT573216.1 Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616375.2	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	3e-54	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	G7K1Y5	0.0	G7K1Y5_MEDTR; BHLH transcription factor, putative
STRING	AES99333	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-56	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Medtr5g079500.1
Entrez Gene	11426918

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]