PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g079290.1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 265aa    MW: 30481.9 Da    PI: 9.4226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g079290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+ +++++G g W++++++ g++R++k+c++rw++yl
  Medtr5g079290.1 19 KGAWTYEEDKLLKACIQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 66
                     79********************************************97 PP
2Myb_DNA-binding42.31.8e-1373117248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++ ++E +  ++++k+lG++ W++Ia++++ gRt++++k++w+++l
  Medtr5g079290.1  73 ESFAEDEVDMMLRLHKLLGNR-WSLIAARLP-GRTANDVKNYWHTHL 117
                      56778999999**********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0521466IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-211568IPR009057Homeodomain-like
SuperFamilySSF466895.5E-2816113IPR009057Homeodomain-like
SMARTSM007171.4E-131868IPR001005SANT/Myb domain
PfamPF002492.0E-161966IPR001005SANT/Myb domain
CDDcd001672.30E-102166No hitNo description
PROSITE profilePS5129423.35767121IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2269122IPR009057Homeodomain-like
SMARTSM007175.7E-1371119IPR001005SANT/Myb domain
PfamPF002495.4E-1273117IPR001005SANT/Myb domain
CDDcd001673.18E-977117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSMDNKGKLN MEMTRGVRKG AWTYEEDKLL KACIQKYGEG KWHLVPQRAG LNRCRKSCRL  60
RWLNYLTPNI KRESFAEDEV DMMLRLHKLL GNRWSLIAAR LPGRTANDVK NYWHTHLRKK  120
MVSRTLEEKK EKPKETMKVH EIIKPKPRTF STHPPSLNWK HNINVTPIVA VSTQHGEVSP  180
NRDNKEITDS NQIGRDIVGV SQPSLGSAPI PCAMLWDSLL NLEEHKSSEK IGSGSLLQEE  240
NFISEFPNVD DSFWDFNLCD FDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24191217108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g079290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6902850.0JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616362.30.0transcription factor MYB113
SwissprotQ9FNV97e-62MY113_ARATH; Transcription factor MYB113
TrEMBLI0CC980.0I0CC98_MEDTR; MYB transcription factor
STRINGAES993200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-62myb domain protein 113
Publications ? help Back to Top
  1. Carletti G,Lucini L,Busconi M,Marocco A,Bernardi J
    Insight into the role of anthocyanin biosynthesis-related genes in Medicago truncatula mutants impaired in pigmentation in leaves.
    Plant Physiol. Biochem., 2013. 70: p. 123-32
    [PMID:23774374]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]