PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g079290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30481.9 Da PI: 9.4226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+ +++++G g W++++++ g++R++k+c++rw++yl Medtr5g079290.1 19 KGAWTYEEDKLLKACIQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.3 | 1.8e-13 | 73 | 117 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ ++E + ++++k+lG++ W++Ia++++ gRt++++k++w+++l Medtr5g079290.1 73 ESFAEDEVDMMLRLHKLLGNR-WSLIAARLP-GRTANDVKNYWHTHL 117 56778999999**********.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.052 | 14 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.5E-28 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-10 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 23.357 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 69 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-12 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.18E-9 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MSMDNKGKLN MEMTRGVRKG AWTYEEDKLL KACIQKYGEG KWHLVPQRAG LNRCRKSCRL 60 RWLNYLTPNI KRESFAEDEV DMMLRLHKLL GNRWSLIAAR LPGRTANDVK NYWHTHLRKK 120 MVSRTLEEKK EKPKETMKVH EIIKPKPRTF STHPPSLNWK HNINVTPIVA VSTQHGEVSP 180 NRDNKEITDS NQIGRDIVGV SQPSLGSAPI PCAMLWDSLL NLEEHKSSEK IGSGSLLQEE 240 NFISEFPNVD DSFWDFNLCD FDSL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-24 | 19 | 121 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g079290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ690285 | 0.0 | JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616362.3 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 7e-62 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | I0CC98 | 0.0 | I0CC98_MEDTR; MYB transcription factor | ||||
STRING | AES99320 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-62 | myb domain protein 113 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g079290.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|