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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g076960.1 | ||||||||
Common Name | MTR_5g076960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 421aa MW: 47073.7 Da PI: 6.5656 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 43 | 87 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Medtr5g076960.1 43 REKWTDEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 87 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.13E-17 | 37 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.149 | 38 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 40 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-16 | 41 | 90 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-13 | 42 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 43 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.13E-10 | 45 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MEILGQKEGM HSVIHVQKLL DQFSCGNDHA LKARKPYTIT KQREKWTDEE HKKFLEALKL 60 YGRAWRKIEE HVGTKTAVQI RSHAQKFFSK INRDTDGNDT TMVETIEIPP PRPKRKPIHP 120 YPRKLVEIPK NEISNLEQPL RSNSLVSLDF GQENNSPKSV LSAVASETLG FSDSDTPAGS 180 LSPVSSISAV HTSRFPLLES KSSSSEEDLS QQIDELNGGS THDVQPLMKL ELFPKECVAT 240 NEVAAEESPC RTLKLFGTTL LVKDTCKSSL TSTDASEPIP ATQQLQRGCS DISLATVVPW 300 WTISDNSAFK PLHTEPEGKH LHSNHGECED KEIQKEGSSC VGSNSTSSIS DEESNERLDD 360 QAKSDNVNYF VGHTTLNETV RLRTFGKGFV PYKRCMAERE RQCSTVTDER REHQRMRLSL 420 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13346 | 0.0 | flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g076960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141701 | 0.0 | BT141701.1 Medicago truncatula clone JCVI-FLMt-19O16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616176.1 | 0.0 | protein REVEILLE 1 | ||||
TrEMBL | G7KFU7 | 0.0 | G7KFU7_MEDTR; Myb transcription factor | ||||
STRING | AES99134 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-48 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g076960.1 |
Entrez Gene | 11427268 |
Publications ? help Back to Top | |||
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