PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g075410.1
Common NameMTR_5g075410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 787aa    MW: 86914.6 Da    PI: 7.5873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g075410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.4e-17322421198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+psd+++ grlvlpk +ae++   + + e++ l+++d  g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  Medtr5g075410.1 322 FEKVLSPSDAGRIGRLVLPKACAEAFlpRILQSEGVPLQFQDIMGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSLQLNAGDTVTFSRID-PGE 413
                      99***********************9**555567889***************9989999999***9.********************998.555 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +++++++r
  Medtr5g075410.1 414 KFLFGFRR 421
                      55999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.109.3E-4542IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.102.1E-27318430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20320422IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-22320421No hitNo description
SMARTSM010191.1E-19322422IPR003340B3 DNA binding domain
PROSITE profilePS508639.841322422IPR003340B3 DNA binding domain
PfamPF023621.4E-14322421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGVEVCMNNY CKEGSTGEWK KGWSLISGGF AKLCNKCGLA YENSLFCDKF HRHETGWRKC  60
SNCSKPIHSG CIVSKSSFEY LDFGGITCVT CVKPSQLCLN TENHNRFSQT TKNNASDQYG  120
EHIDGRLLVE QAGKGNLMQL CRIGEVGESS RWPQAQRDAM VSCIGPKTEE VKCQFNKEDT  180
RFLNVMKHSS HLTAFTTLEN NRPSWETKSI DETLSLKMAL GTSSRNSVLP LATEIGEGKL  240
EGKASSHFQQ GQTSQSILAQ LSKTGIAMNL ETNKGMISHP PRRPPADVKG KNQLLSRYWP  300
RITDQELEKL SGDLKSTVVP LFEKVLSPSD AGRIGRLVLP KACAEAFLPR ILQSEGVPLQ  360
FQDIMGNEWT FQFRFWPNNN SRMYVLEGVT PCIQSLQLNA GDTVTFSRID PGEKFLFGFR  420
RSLTSIVTQD ASTSSHSNGI LIKDTNFSGA PQNLNSLSSF SNLLQSMKGN GEPYLNGHSE  480
HLRLGNGTAD WLKTANSEEE MNNGPLQRLV SVSEKKRSRN IGTKTKRLHI HSEDAMELRL  540
TWEEAQEFLC PPPSVEPNFV TIEDQVFEEY DEPPVFGKIK TNASPSGSSG SASEQLGPKE  600
QESLQRTKKD SKKKRKIAEK SKSIQEHKLS GLDALANAAV LGNNLADPDE SSSAGVTTRH  660
PRHRPGCTCI VCIQPPSGQG KHDPTCTCLA CETLKRRFKS LTMRKKKNQL ESEAVADQNN  720
QVNHRDEAGT SVGASRQDTS HSTDEGSLNG GQLEVVEPSA AGQLDLNCHP SHEEMETDTY  780
NRPKHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-593004222124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1694705KRRFKSLTMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g075410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1419230.0AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616034.20.0B3 domain-containing protein Os07g0679700
RefseqXP_024640355.10.0B3 domain-containing protein Os07g0679700
RefseqXP_024640356.10.0B3 domain-containing protein Os07g0679700
RefseqXP_024640357.10.0B3 domain-containing protein Os07g0679700
TrEMBLG7K0T70.0G7K0T7_MEDTR; B3 domain transcription repressor VAL2
STRINGAES989920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-137HSI2-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]