PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g074200.1
Common NameMTR_5g074200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 328aa    MW: 37503.1 Da    PI: 9.2174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g074200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.67.1e-25220275258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgynW+KY  K+ kgse+ rsYY+Ct ++C vkkkver+  d++v+e+ Y+g+Hnh
  Medtr5g074200.1 220 DDGYNWKKYEEKVAKGSENQRSYYKCTWPNCFVKKKVERTI-DGEVIETLYKGTHNH 275
                      8****************************************.*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-22209278IPR003657WRKY domain
SuperFamilySSF1182901.1E-20216278IPR003657WRKY domain
SMARTSM007743.6E-24219277IPR003657WRKY domain
PfamPF031066.4E-19220275IPR003657WRKY domain
PROSITE profilePS5081120.002220278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005794Cellular ComponentGolgi apparatus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPIRISNRLI QKNQWRILGF FSSIMGFISY ASSSSFNHLF GKWNFIKIII YTVVSFSISS  60
MMLFLKKWKL SKRFLLRAHL GVLVLLLTSL YSFVSDKASN EKPDLLSMIS CVAFALMSFC  120
LSRQIDLGFE SDLLNFFLGI LTVQLMKINL ILSIVAAILC YSLIVLRSKL GSRHEIGTLR  180
VEDDVAIEID GVDNNRNEFQ SDYSNGRQQN KSSVRRMNHD DGYNWKKYEE KVAKGSENQR  240
SYYKCTWPNC FVKKKVERTI DGEVIETLYK GTHNHWKPTS SMKRNSSSEY LYSLLPSETG  300
SIDLQDQSFG SEQLDSDEEP TKSSVSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-152202781877Probable WRKY transcription factor 4
2lex_A1e-152202781877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g074200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351610.0AC135161.14 Medicago truncatula clone mth2-30k24, complete sequence.
GenBankAC1380120.0AC138012.32 Medicago truncatula clone mth2-9b15, complete sequence.
GenBankCR9329600.0CR932960.3 Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615935.10.0uncharacterized protein LOC11415730
TrEMBLG7IXC70.0G7IXC7_MEDTR; WRKY family transcription factor
STRINGAES699030.0(Medicago truncatula)
STRINGAES988930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147431012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-25WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]