PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g070440.1
Common NameMTR_5g070440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 275aa    MW: 31931.7 Da    PI: 9.9922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g070440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84.1e-1321112199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k+ +ps  ++++ +++p +f++++g++   +   t++ ++gr+W+++l  +k+++ +++ + W+eFv+   +  g f+ Fk++g+s+f   v
  Medtr5g070440.1  21 FMKAILPSPIHSKQ-IRIPDEFITRFGNE--LNNVATITVPDGRVWKMEL--KKRGENVFFCNKWQEFVEYYSIGYGCFISFKYEGNSKF--SV 107
                      77888888888886.********999855..667899999**********..999999****************************9999..88 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f++
  Medtr5g070440.1 108 IIFDA 112
                      88876 PP
2B340.16.3e-131932692199
                      HH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  21 kfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +fa+++ +k++ +  ++l++++g++Wev  i+ + +s+++ +t+G + F k+n+L  gD +vF+l++++   l+v++fr+
  Medtr5g070440.1 193 DFATKY-LKPNIP--IKLQNSHGEQWEVFGIFhDARSSAIQITRGFSIFQKDNNLSYGDYCVFELIKTKPVVLKVTMFRA 269
                      577777.344555..9************99988999999***************************99999899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2114113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2016112IPR015300DNA-binding pseudobarrel domain
CDDcd100179.24E-1419111No hitNo description
PROSITE profilePS5086311.50520113IPR003340B3 DNA binding domain
PfamPF023624.7E-1121112IPR003340B3 DNA binding domain
SMARTSM010193.6E-1521113IPR003340B3 DNA binding domain
CDDcd100172.29E-9169268No hitNo description
Gene3DG3DSA:2.40.330.108.4E-12170269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-11171268IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0031178270IPR003340B3 DNA binding domain
PfamPF023627.6E-10193269IPR003340B3 DNA binding domain
PROSITE profilePS508639.234205270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQPSRRKCVR ISSPEKESKH FMKAILPSPI HSKQIRIPDE FITRFGNELN NVATITVPDG  60
RVWKMELKKR GENVFFCNKW QEFVEYYSIG YGCFISFKYE GNSKFSVIIF DATSVEISYP  120
FETPSTNGEP KTNYPSSRKR SKVETCERLR KKVKNMSKYA SKRVEDAAKE LNPNNPYFRS  180
KIVKGKYAYV NFDFATKYLK PNIPIKLQNS HGEQWEVFGI FHDARSSAIQ ITRGFSIFQK  240
DNNLSYGDYC VFELIKTKPV VLKVTMFRAI DYCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1416227233145B3 domain-containing transcription factor VRN1
4i1k_B6e-1416227233145B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g070440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444590.0AC144459.8 Medicago truncatula clone mth2-23o13, complete sequence.
GenBankAC1507040.0AC150704.34 Medicago truncatula clone mth2-131h23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640216.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLG7KE590.0G7KE59_MEDTR; B3 DNA-binding domain protein
STRINGAES986030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-27B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]