PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g070440.1 | ||||||||
Common Name | MTR_5g070440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 31931.7 Da PI: 9.9922 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4.1e-13 | 21 | 112 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+ +ps ++++ +++p +f++++g++ + t++ ++gr+W+++l +k+++ +++ + W+eFv+ + g f+ Fk++g+s+f v Medtr5g070440.1 21 FMKAILPSPIHSKQ-IRIPDEFITRFGNE--LNNVATITVPDGRVWKMEL--KKRGENVFFCNKWQEFVEYYSIGYGCFISFKYEGNSKF--SV 107 77888888888886.********999855..667899999**********..999999****************************9999..88 PP EEE-S CS B3 95 kvfrk 99 +f++ Medtr5g070440.1 108 IIFDA 112 88876 PP | |||||||
2 | B3 | 40.1 | 6.3e-13 | 193 | 269 | 21 | 99 |
HH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 21 kfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +fa+++ +k++ + ++l++++g++Wev i+ + +s+++ +t+G + F k+n+L gD +vF+l++++ l+v++fr+ Medtr5g070440.1 193 DFATKY-LKPNIP--IKLQNSHGEQWEVFGIFhDARSSAIQITRGFSIFQKDNNLSYGDYCVFELIKTKPVVLKVTMFRA 269 577777.344555..9************99988999999***************************99999899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.24E-14 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 11.505 | 20 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-11 | 21 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-15 | 21 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.29E-9 | 169 | 268 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-12 | 170 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-11 | 171 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0031 | 178 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-10 | 193 | 269 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.234 | 205 | 270 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MQPSRRKCVR ISSPEKESKH FMKAILPSPI HSKQIRIPDE FITRFGNELN NVATITVPDG 60 RVWKMELKKR GENVFFCNKW QEFVEYYSIG YGCFISFKYE GNSKFSVIIF DATSVEISYP 120 FETPSTNGEP KTNYPSSRKR SKVETCERLR KKVKNMSKYA SKRVEDAAKE LNPNNPYFRS 180 KIVKGKYAYV NFDFATKYLK PNIPIKLQNS HGEQWEVFGI FHDARSSAIQ ITRGFSIFQK 240 DNNLSYGDYC VFELIKTKPV VLKVTMFRAI DYCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-14 | 162 | 272 | 33 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-14 | 162 | 272 | 33 | 145 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g070440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144459 | 0.0 | AC144459.8 Medicago truncatula clone mth2-23o13, complete sequence. | |||
GenBank | AC150704 | 0.0 | AC150704.34 Medicago truncatula clone mth2-131h23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640216.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | G7KE59 | 0.0 | G7KE59_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES98603 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g070440.1 |
Entrez Gene | 11408604 |
Publications ? help Back to Top | |||
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