PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g069030.1
Common NameMTR_5g069030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 631aa    MW: 70313.2 Da    PI: 4.5515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g069030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.4e-51251511127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeelv++yL+ k++g+  e+  vi+evd++k+ePwdLp  + v++++ ew+fF++ d+ky++g+r nrat++gyWkatgkd+++
  Medtr5g069030.1  25 LPLGFRFRPTDEELVDFYLRMKINGNGDEV-WVIREVDVCKFEPWDLPdlSIVRNKDPEWFFFCPMDRKYPNGSRLNRATTNGYWKATGKDRKI 117
                      699************************999.89***************6336677888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      +s + +l+g+kktLvfy grapkg++t+W+mheyr
  Medtr5g069030.1 118 KS-GATLIGMKKTLVFYAGRAPKGQRTHWIMHEYR 151
                      **.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6020175IPR003441NAC domain
PROSITE profilePS5100556.0225175IPR003441NAC domain
PfamPF023658.2E-2726151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MGAVVECLPS PQQAEELAVL SLNKLPLGFR FRPTDEELVD FYLRMKINGN GDEVWVIREV  60
DVCKFEPWDL PDLSIVRNKD PEWFFFCPMD RKYPNGSRLN RATTNGYWKA TGKDRKIKSG  120
ATLIGMKKTL VFYAGRAPKG QRTHWIMHEY RPTLKELDGT NPGQNPYVLC RLFKKQDESL  180
ASSNCGEAEQ TTSTPTTANY SPEEIQSDLN LVPLSSSLAT EDERHLAAIP ENSEEAMSHV  240
ITTADCYSDA CNASDAQHQS LEVPAAEEDQ LLNLDIFDSP RFELEPWDDK LFSPAHAHFP  300
PEFGHQANNE LIQYGTNGTD VSDFFDSCVN WDEFSSEASI SLELSPNIFK IPENGSCSNS  360
DVEMANMMNL LASHDYPEGV TLQNSDVGLF QNNSQMTLSN DFSMGQMPTV VNEYEQMWNS  420
DTVVDGGTGI GIRSRQRQNE QPDMNQVMQA QGSAPRRIRL GGFVARSLVS ETTEDGSCAS  480
EYEQSRILDT VVLGDDTGIR IRRRQRRNEE PNMNPVMQAQ GSALRRIRLG GFVKHSLVSE  540
ETTKDESLQE TEASENHAAA ESASVLEKTS PMSAREICEQ HVTTAESNSG SKNFLLGRVR  600
CTSKTSSISA MRSTVLAYSA IDMTIPKFNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-472517815171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121150.0root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g069030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1413540.0BT141354.1 Medicago truncatula clone JCVI-FLMt-22C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615517.10.0NAC domain-containing protein 62 isoform X2
TrEMBLG7K6910.0G7K691_MEDTR; NAC transcription factor-like protein
STRINGAES984750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-100NAC transcription factor-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]