PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g048860.9 | ||||||||
Common Name | MTR_5g048860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 59905.2 Da PI: 4.8699 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6.2e-09 | 374 | 422 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq Medtr5g048860.9 374 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 422 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-17 | 369 | 440 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.69E-11 | 369 | 426 | No hit | No description |
PROSITE profile | PS50888 | 15.459 | 371 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 372 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-6 | 374 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-10 | 377 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MSDKEKFEVD GNEEDPMSYS SGMPPDWRFG ANSSVGLVSI GNSMSMNRGD LIGSSSCSSA 60 SMVDSFSPNF WDHSANSQNL GFCDINGSSS NTIGIRKDGF GFGRGGHDHG TLEIGWNQAN 120 AMMKGDGFLP NGQGVFPQSL SQFPTDSGFI ERAARFSCFG GGNFSDVVNA YGVPQSMAMY 180 AGSIHGTRDA LAGVGLRVAN GGPTQESDDP NVVEAATKGV VSPSVEQLAT RESPLKNDKS 240 EGWVGSQDEG KQALVQNVND SDGGESGDDD GGRGGQDGSP MLEGTTSGEP SMKGLNSKKR 300 KRSGQDADND KPNGTQELQN EGAKDNPENQ QKCDQQPTST IKASGKNAKQ GSQNSDPPKE 360 EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQELVPG CSKVTGKAVM LDEIINYVQS 420 LQRQVEFLSM KLATVNPRLD FNIESLLAKD VLHQRPGPSS TLGFPLEMSM NFPPLHPSQP 480 GMIQSVIPNM ANPSDILRRT IHTQLTPLSG GFKEPNQMPD VWADELHNVV QMSFATTAPM 540 SSQDVDGTTA ANQMKVEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 302 | KKRKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14730 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g048860.9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024639981.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639982.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639983.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639984.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639985.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639986.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639987.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_024639988.1 | 0.0 | transcription factor bHLH49 | ||||
TrEMBL | A0A072UE55 | 0.0 | A0A072UE55_MEDTR; BHLH transcription factor | ||||
STRING | XP_004490333.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-102 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g048860.9 |
Entrez Gene | 25494693 |
Publications ? help Back to Top | |||
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