PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g048350.1
Common NameMTR_5g048350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 336aa    MW: 37155.2 Da    PI: 7.0112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g048350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-164695255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Medtr5g048350.1 46 RSKHSVTEQRRRSKINERFQILRDLIPQC----DQKRDTASFLLEVIEYVQYLQ 95
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2724494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1945116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-2345117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-144695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-154699No hitNo description
SMARTSM003537.5E-1250100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKAGKVNHEE DEYDDDEFNS NKKQATSSVP NTNKDGKATD KASVIRSKHS VTEQRRRSKI  60
NERFQILRDL IPQCDQKRDT ASFLLEVIEY VQYLQERVQK YEGSYQGWSQ EPSKLMPWRN  120
SHWRAQNFVG QPPIVKNGSG PVLPFPGKFD ENSVGISPTM LSGSHNMIDH DPTRDIVGKT  180
AERQPDLASK GIPLPMAMHA NMSVPVRSDG VLSHPLQGTV SDAQSTECPT TSEQLNQQDD  240
LTVEGGTISI SSVYSQGLLN NLTQALQSAG LDLSKANISV QIDLGKRANK DPSGTASSPK  300
NHDNPLCCNQ SFAHFRDGGN REDSDQAQKR MKTYK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.49430.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g048350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0530190.0BT053019.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-B-11 unknown mRNA.
GenBankBT1335880.0BT133588.1 Medicago truncatula clone JCVI-FLMt-12L3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614339.10.0transcription factor BIM2
SwissprotQ9CAA41e-113BIM2_ARATH; Transcription factor BIM2
TrEMBLG7JZB30.0G7JZB3_MEDTR; Putative transcription factor bHLH family
STRINGAES972970.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-116BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]