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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g046790.1 | ||||||||
Common Name | MTR_5g046790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24672.3 Da PI: 8.302 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskR++g+lKKA+E+SvLCdaeva+iifs++gkl++ys+ Medtr5g046790.1 9 KRIENKINRQVTFSKRKTGLLKKAKEISVLCDAEVALIIFSHNGKLFDYST 59 79***********************************************96 PP | |||||||
2 | K-box | 108.9 | 5.5e-36 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ ++e+++ e+++Lk+++e Lqr++Rh++Ge+L+s+slkeLq LeqqL+++lk+iR++K+++++e i+elqkkek +qe+n++L+k+++e Medtr5g046790.1 83 NDTDTQENWTMEYTRLKAKVELLQRNHRHYMGEELDSMSLKELQCLEQQLDTGLKNIRTRKTQVMYEAISELQKKEKGIQEQNNMLSKEIKE 174 5677899**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.00E-38 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.8E-31 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.129 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGRSKVQLKR IENKINRQVT FSKRKTGLLK KAKEISVLCD AEVALIIFSH NGKLFDYSTD 60 SCMEQILERH ERYGYAERLL VGNDTDTQEN WTMEYTRLKA KVELLQRNHR HYMGEELDSM 120 SLKELQCLEQ QLDTGLKNIR TRKTQVMYEA ISELQKKEKG IQEQNNMLSK EIKEKEKVVA 180 QEAAAQWEQP NYRVDTCFLL QDPLLPGLNM G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2C |
5f28_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2C |
5f28_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2C |
5f28_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2C |
6byy_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g046790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051745 | 0.0 | BT051745.1 Medicago truncatula clone MTYF5_F6_F7_F81G-O-5 unknown mRNA. | |||
GenBank | BT149143 | 0.0 | BT149143.1 Medicago truncatula clone JCVI-FLMt-16M7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614234.3 | 1e-155 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-106 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | G7JX12 | 1e-155 | G7JX12_MEDTR; MADS-box transcription factor | ||||
STRING | AES97192 | 1e-154 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 9e-94 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g046790.1 |
Entrez Gene | 11435341 |
Publications ? help Back to Top | |||
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