PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g046160.1 | ||||||||
Common Name | MTR_5g046160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 30133.2 Da PI: 9.9084 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00062 | 140 | 170 | 5 | 36 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapsk 36 h E++R+ ++ ++++ Lr +l + k+++k Medtr5g046160.1 140 HELEEKKRVIDMTKSLAVLRNILTDL-KEKNK 170 7888*******************997.34444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08731 | 1.9E-5 | 92 | 142 | IPR014842 | Transcription factor AFT |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGLKNLTAFY LSKQVCCLGC PFQLLRFKGL IVVAAARLVV DETFCVMSQI KSWERDDLLG 60 WVCQQVAKAE FTIFIDKSSL KKPTLTMQCE RNGEYKPPKT RKKSKRTGSR KCQCPFRLRG 120 FFEKDTNGWW IAMLSGIHHH ELEEKKRVID MTKSLAVLRN ILTDLKEKNK ESLTTIKQVY 180 NTQTRWHKGI IGDKTKIQYL ISKLEGHKYV YFARANSEET TLEDIYISHP ESINMLNTFP 240 TVLIMEASHH KYSSFILGIQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g046160.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR936326 | 0.0 | CR936326.2 Medicago truncatula chromosome 5 clone mte1-25j21, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024628739.1 | 2e-74 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | G7JWX6 | 0.0 | G7JWX6_MEDTR; Transcription factor AFT | ||||
STRING | AES97156 | 0.0 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g046160.1 |
Entrez Gene | 11425936 |
Publications ? help Back to Top | |||
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