PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g044670.1
Common NameMTR_5g044670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 331aa    MW: 38912.9 Da    PI: 9.5125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g044670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16161081100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv + +   k++ ++lp++f++++g+k   s  +tl  ++g +Wev     k++  + ++kGW++F +   +  g f+vF+l+ rs+f   v
  Medtr5g044670.1  16 FFKVIVEKTL-KKKEIILPRSFVKKYGKK--LSNPVTLVLPNGDKWEVHW--IKRDHDVCFQKGWENFSQHYSMSYGHFLVFRLETRSQF--QV 102
                      7777765555.5556***********977..67779999999********..999999**************************999999..99 PP

                      EEE-SS CS
               B3  95 kvfrks 100
                      ++f+ks
  Medtr5g044670.1 103 MIFDKS 108
                      999985 PP
2B347.82.5e-152203031498
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                        + +p +f +e+ +gk  +++  +l   + ++W+++++++ + +r ++t+GW + v++ + k+gD++vF+++++ + f ++v+++r
  Medtr5g044670.1 220 EHMFIPTSFSKEYlNGK--NGIATVLFGDEDKTWRLNFKFNDTTNRALITSGWGQIVDEYNFKVGDTCVFEMTDStNIF-FKVHIVR 303
                      3489*********7555..455666777799****************************************88763444.7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2112108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-2113108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.09815108IPR003340B3 DNA binding domain
CDDcd100171.20E-1515106No hitNo description
SMARTSM010192.5E-1516108IPR003340B3 DNA binding domain
PfamPF023622.2E-1316107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-20199310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-21204305IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.379207305IPR003340B3 DNA binding domain
CDDcd100171.16E-18208303No hitNo description
SMARTSM010191.3E-10210305IPR003340B3 DNA binding domain
PfamPF023622.4E-13217304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSPSSVHQF HKSQCFFKVI VEKTLKKKEI ILPRSFVKKY GKKLSNPVTL VLPNGDKWEV  60
HWIKRDHDVC FQKGWENFSQ HYSMSYGHFL VFRLETRSQF QVMIFDKSAL EMDYWSIPSP  120
RYQVERNIHR HEDAEKSGDK DDYIEISDET EMRRSSSPQP HKRMKTSDGG NAEIFFKEKN  180
VSSNEAMNWK ELLQNTKRRA MNFHSDNPFF IRPLHPSYLE HMFIPTSFSK EYLNGKNGIA  240
TVLFGDEDKT WRLNFKFNDT TNRALITSGW GQIVDEYNFK VGDTCVFEMT DSTNIFFKVH  300
IVRANDQSSS EHFQDFGNPK LKRKSNSRQN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g044670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0276650.0CT027665.3 Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640573.11e-170B3 domain-containing protein REM19
TrEMBLG7JXZ70.0G7JXZ7_MEDTR; B3 DNA-binding domain protein
STRINGAES970510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-19B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]