PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g044670.1 | ||||||||
Common Name | MTR_5g044670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 331aa MW: 38912.9 Da PI: 9.5125 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 16 | 108 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv + + k++ ++lp++f++++g+k s +tl ++g +Wev k++ + ++kGW++F + + g f+vF+l+ rs+f v Medtr5g044670.1 16 FFKVIVEKTL-KKKEIILPRSFVKKYGKK--LSNPVTLVLPNGDKWEVHW--IKRDHDVCFQKGWENFSQHYSMSYGHFLVFRLETRSQF--QV 102 7777765555.5556***********977..67779999999********..999999**************************999999..99 PP EEE-SS CS B3 95 kvfrks 100 ++f+ks Medtr5g044670.1 103 MIFDKS 108 999985 PP | |||||||
2 | B3 | 47.8 | 2.5e-15 | 220 | 303 | 14 | 98 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + +p +f +e+ +gk +++ +l + ++W+++++++ + +r ++t+GW + v++ + k+gD++vF+++++ + f ++v+++r Medtr5g044670.1 220 EHMFIPTSFSKEYlNGK--NGIATVLFGDEDKTWRLNFKFNDTTNRALITSGWGQIVDEYNFKVGDTCVFEMTDStNIF-FKVHIVR 303 3489*********7555..455666777799****************************************88763444.7777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-21 | 13 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.098 | 15 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.20E-15 | 15 | 106 | No hit | No description |
SMART | SM01019 | 2.5E-15 | 16 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-20 | 199 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 204 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.379 | 207 | 305 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-18 | 208 | 303 | No hit | No description |
SMART | SM01019 | 1.3E-10 | 210 | 305 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-13 | 217 | 304 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSSPSSVHQF HKSQCFFKVI VEKTLKKKEI ILPRSFVKKY GKKLSNPVTL VLPNGDKWEV 60 HWIKRDHDVC FQKGWENFSQ HYSMSYGHFL VFRLETRSQF QVMIFDKSAL EMDYWSIPSP 120 RYQVERNIHR HEDAEKSGDK DDYIEISDET EMRRSSSPQP HKRMKTSDGG NAEIFFKEKN 180 VSSNEAMNWK ELLQNTKRRA MNFHSDNPFF IRPLHPSYLE HMFIPTSFSK EYLNGKNGIA 240 TVLFGDEDKT WRLNFKFNDT TNRALITSGW GQIVDEYNFK VGDTCVFEMT DSTNIFFKVH 300 IVRANDQSSS EHFQDFGNPK LKRKSNSRQN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g044670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT027665 | 0.0 | CT027665.3 Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640573.1 | 1e-170 | B3 domain-containing protein REM19 | ||||
TrEMBL | G7JXZ7 | 0.0 | G7JXZ7_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES97051 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g044670.1 |
Entrez Gene | 11426643 |
Publications ? help Back to Top | |||
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