PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g043930.1
Common NameMTR_5g043930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 515aa    MW: 56425.8 Da    PI: 9.4788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g043930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023436458123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C+k F++   L  H r+H
  Medtr5g043930.1 436 HECPICNKIFKSGQALGGHKRSH 458
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003557.3426IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-6427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.21105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473105132IPR007087Zinc finger, C2H2
SuperFamilySSF576676.15E-8106127No hitNo description
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
PfamPF139125.4E-7107129IPR007087Zinc finger, C2H2
SuperFamilySSF576676.15E-8431458No hitNo description
SMARTSM003550.015436458IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-11436458IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64436458IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEDRVCKYCL KRFPCGKSLG GHIRTHMMSE NSLQSNEEKR MNANASVNAM FKFDEGRKRK  60
RLDLGSNGGG SGGDDGNLIY GLRENPKKTT RFVHSNAAAT VQMEKFCKEC GKGFPSLKAL  120
CGHMACHSEK DKGANRIESV SGVREKQKLV MDSQSDTEAS VQTDSRRSRR MKFKNLSGGG  180
GDNKSSSSLH WGNCSSSVSE VEQEQEDVAR CLMLLSRDST YKGRFPLVTE SSDNNSVVVE  240
EKSPSVDTKF AVMNRGKNIV GAKNNGFELA EKKLNKDGKM KSVEIGYVSD NSDSGYFTYG  300
PKKVESDDSS DGFFRNDAKS SKVGYFSSFQ DHDFESSKKI ISRGRNRNSA EFKKVVLENS  360
SKKTKNGYNN EVYESLKIDR ESYSEDSAYE SDENSSESDS YPAPKAQSNK NMNGKTNKKS  420
SYKGKKKMKS KKSKEHECPI CNKIFKSGQA LGGHKRSHFI GGNDDNTLVI RPAAAAHAHA  480
APAAHAHAAP APPAFAAAAN PSLFDLNLPA PDDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g043930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467850.0AC146785.12 Medicago truncatula clone mth2-4h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614031.10.0dentin sialophosphoprotein
TrEMBLG7JWR40.0G7JWR4_MEDTR; C2H2-type zinc finger protein
STRINGAES969890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-53C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]