PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g041940.1
Common NameMTR_5g041940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 261aa    MW: 30003.8 Da    PI: 7.4401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g041940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.53e-5431281128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp k   +e+ewyfF++r++ky++g r+nrat sgyWkatg+dk+++s
  Medtr5g041940.1   3 LPPGFRFHPTDEELIVYYLCNQATSQPCPA-SIIPEVDIYKFDPWELPDKSGFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKSIFS 95 
                      79****************************.89***************8888899*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++g+kk Lvfykgr pkg ktdW+mheyrl
  Medtr5g041940.1  96 -GSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRL 128
                      .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-652155IPR003441NAC domain
PROSITE profilePS5100560.7553155IPR003441NAC domain
PfamPF023658.5E-274128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MELPPGFRFH PTDEELIVYY LCNQATSQPC PASIIPEVDI YKFDPWELPD KSGFGENEWY  60
FFTPRERKYP NGVRPNRATV SGYWKATGTD KSIFSGSKHI GVKKALVFYK GRPPKGIKTD  120
WIMHEYRLIG SRRQANRQIG SMRLDDWVLC RIYKKKNITK SLETNEDYPT NQINMTQTND  180
DNEQELVKFP RTCSLTNLLD MDYMGPISQI LSDGSYNSTF EFQINTAHGG TIDPTYAAGL  240
EKYNVKQNSS FGNQVFDQRE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-71115715167NO APICAL MERISTEM PROTEIN
1ut4_B1e-71115715167NO APICAL MERISTEM PROTEIN
1ut7_A1e-71115715167NO APICAL MERISTEM PROTEIN
1ut7_B1e-71115715167NO APICAL MERISTEM PROTEIN
3swm_A2e-71115718170NAC domain-containing protein 19
3swm_B2e-71115718170NAC domain-containing protein 19
3swm_C2e-71115718170NAC domain-containing protein 19
3swm_D2e-71115718170NAC domain-containing protein 19
3swp_A2e-71115718170NAC domain-containing protein 19
3swp_B2e-71115718170NAC domain-containing protein 19
3swp_C2e-71115718170NAC domain-containing protein 19
3swp_D2e-71115718170NAC domain-containing protein 19
3ulx_A1e-71115713170Stress-induced transcription factor NAC1
4dul_A1e-71115715167NAC domain-containing protein 19
4dul_B1e-71115715167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.132020.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g041940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1393760.0BT139376.1 Medicago truncatula clone JCVI-FLMt-4F18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613866.10.0NAC transcription factor 29
SwissprotK4BNG71e-114NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLG7KGQ80.0G7KGQ8_MEDTR; NAC transcription factor-like protein
STRINGAES968240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-112NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]