PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g041940.1 | ||||||||
Common Name | MTR_5g041940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 30003.8 Da PI: 7.4401 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.5 | 3e-54 | 3 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp k +e+ewyfF++r++ky++g r+nrat sgyWkatg+dk+++s Medtr5g041940.1 3 LPPGFRFHPTDEELIVYYLCNQATSQPCPA-SIIPEVDIYKFDPWELPDKSGFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKSIFS 95 79****************************.89***************8888899*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kk Lvfykgr pkg ktdW+mheyrl Medtr5g041940.1 96 -GSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRL 128 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-65 | 2 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.755 | 3 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-27 | 4 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MELPPGFRFH PTDEELIVYY LCNQATSQPC PASIIPEVDI YKFDPWELPD KSGFGENEWY 60 FFTPRERKYP NGVRPNRATV SGYWKATGTD KSIFSGSKHI GVKKALVFYK GRPPKGIKTD 120 WIMHEYRLIG SRRQANRQIG SMRLDDWVLC RIYKKKNITK SLETNEDYPT NQINMTQTND 180 DNEQELVKFP RTCSLTNLLD MDYMGPISQI LSDGSYNSTF EFQINTAHGG TIDPTYAAGL 240 EKYNVKQNSS FGNQVFDQRE * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-71 | 1 | 157 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-71 | 1 | 157 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-71 | 1 | 157 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-71 | 1 | 157 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-71 | 1 | 157 | 18 | 170 | NAC domain-containing protein 19 |
3ulx_A | 1e-71 | 1 | 157 | 13 | 170 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-71 | 1 | 157 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-71 | 1 | 157 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.13202 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g041940.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT139376 | 0.0 | BT139376.1 Medicago truncatula clone JCVI-FLMt-4F18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613866.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | K4BNG7 | 1e-114 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | G7KGQ8 | 0.0 | G7KGQ8_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES96824 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4103 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-112 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g041940.1 |
Entrez Gene | 11420119 |
Publications ? help Back to Top | |||
---|---|---|---|
|