PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g040420.1
Common NameMTR_5g040420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 392aa    MW: 44699.3 Da    PI: 6.6686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g040420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52151412128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPtdeelv +yLk+kv++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+dk+++s+
  Medtr5g040420.1  15 LPGFRFHPTDEELVGFYLKRKVQQRPLSI-ELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDKPIYSS 107
                      69***************************.89***************8888899***************************************9 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Medtr5g040420.1 108 eGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
                      56677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.52414172IPR003441NAC domain
SuperFamilySSF1019415.75E-5714172IPR003441NAC domain
PfamPF023658.0E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEERNDGEKL DEVILPGFRF HPTDEELVGF YLKRKVQQRP LSIELIKQLD IYKYDPWDLP  60
KFASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DKPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLIDPLSP KKYLEKTIPA NESWAICRIF KKTNSTAQRA  180
LSHSWVSSLS ETRTSNMLTK NQEITQFCSS NISLTKNTSL ANHFYTNNND SQNFDEDVTP  240
YKSIISPLLH EDLNTSLIFS SSSPLETSNT NSDIISKSTM DVSSMLLNMS SSSSMLGDFS  300
KTCDEVTTTN FMNGGLQEQF SDYSLPFGNY QYDNNALVKV PYNVNMNVPR IDEQELMNFN  360
IGDAWKSNLL WDTSFCPIDV PSSYSTTKCY T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531617919171NO APICAL MERISTEM PROTEIN
1ut4_B1e-531617919171NO APICAL MERISTEM PROTEIN
1ut7_A1e-531617919171NO APICAL MERISTEM PROTEIN
1ut7_B1e-531617919171NO APICAL MERISTEM PROTEIN
4dul_A1e-531617919171NAC domain-containing protein 19
4dul_B1e-531617919171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g040420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1376640.0CU137664.2 Medicago truncatula chromosome 5 clone mth2-69n5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613753.10.0protein FEZ
SwissprotQ9ZVH01e-112FEZ_ARATH; Protein FEZ
TrEMBLG7KDY30.0G7KDY3_MEDTR; NAC domain class transcription factor
STRINGAES967110.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-111NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]