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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Medtr5g039000.1 |
Common Name | MTR_5g039000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family |
HD-ZIP |
Protein Properties |
Length: 284aa MW: 32504.3 Da PI: 6.3532 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Medtr5g039000.1 | genome | Mt | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.9 | 3.6e-18 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ l+L+ rqV +WFqNrRa++k
Medtr5g039000.1 77 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWK 130
456899***********************************************9 PP
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2 | HD-ZIP_I/II | 131.2 | 4.1e-42 | 76 | 166 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqvk+LE+sFe +kLeperK++lar+L+lqprqva+WFqnrRAR+ktkqlEkdy++Lkr+yda+k +n++L++++++L++e+
Medtr5g039000.1 76 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEI 166
69**************************************************************************************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MHEMAFFQAN FMLQTPHHHD DHHQPSSLNS ILPQDYHGGP SFLGKRCMSF SSGIELGEEA 60 NIPEEDLSDD GSQAGEKKRR LNMEQVKTLE KSFELGNKLE PERKMQLARA LNLQPRQVAI 120 WFQNRRARWK TKQLEKDYDV LKRQYDAIKL DNDALQAQNQ KLQAEILALK NREPTESINL 180 NKETEGSSSN RSENSSEIKL DMSRTPASDS PLSTHQHTTS RTFFPPSARP SSGIAQLFQT 240 SSRPEIQCQK IDQMVKEESL SNMFCGMDDQ AGFWPWLEQQ HFN*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 124 | 132 | RRARWKTKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CT571261 | 0.0 | CT571261.1 Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE. |
Publications
? help Back to Top |
- Young ND, et al.
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]
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