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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g034030.1 | ||||||||
Common Name | MTR_5g034030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | YABBY | ||||||||
Protein Properties | Length: 218aa MW: 24361.4 Da PI: 4.8523 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 206.9 | 7.6e-64 | 6 | 164 | 2 | 166 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 ++f+ +eq+CyvqC+fCntil+vsvP +sl +vvtvrCGhCtsllsvn++kas +lla+ hl+++ + +e+ +++ +++ Medtr5g034030.1 6 HLFDLPEQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLTHLEQKE-------SSSPDEDANKTL--NSN 90 7899**********************************************99977777777777754322.......222222222222..222 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +s+s+ +++ + +ed+ +p v++PPekrqr Psaynrfikeei+r+ka+nPd++h+eafs+aaknWa P+ Medtr5g034030.1 91 TSASMMTYS-DCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCPPT 164 222222222.5677888888888************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-63 | 11 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-9 | 111 | 164 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.2E-7 | 114 | 165 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.00E-5 | 122 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSTLNHLFDL PEQICYVQCG FCNTILMVSV PCSSLTMVVT VRCGHCTSLL SVNMMKASFV 60 PFHLLASLTH LEQKESSSPD EDANKTLNSN TSASMMTYSD CEEDDVIPIS NVVNKPPEKR 120 QRTPSAYNRF IKEEIKRLKA KNPDMAHKEA FSTAAKNWAN CPPTQCKGDE ESCSQTDQFV 180 DLDSQVDPNE AEVNEEEQGF RGRKVPRNSI LERTPFE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g034030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT025841 | 4e-69 | CT025841.2 Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE. | |||
GenBank | CT573503 | 4e-69 | CT573503.1 Medicago truncatula chromosome 5 clone mth2-117h16, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613209.1 | 1e-162 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 2e-71 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | G7K086 | 1e-161 | G7K086_MEDTR; YABBY transcription factor | ||||
STRING | AES96167 | 1e-162 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 8e-74 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g034030.1 |
Entrez Gene | 11405863 |
Publications ? help Back to Top | |||
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