PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g031000.1
Common NameMTR_5g031000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27472.3 Da    PI: 8.8964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g031000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-261058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     ri+n + rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+
  Medtr5g031000.1 10 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYA 58
                     8***********************************************8 PP
2K-box81.91.5e-2776169598
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +++ + e++ + +q+e++ L++++++Lq+++R+l+Ge+L  Ls+++Lq Le+qLe sl+ +R kK+++l+++i+el +k   +++en +L kk+
  Medtr5g031000.1  76 QQVTNPESEVKFWQREADILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGSIIHQENVELYKKV 169
                      445578999**********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.529161IPR002100Transcription factor, MADS-box
CDDcd002652.24E-41277No hitNo description
SuperFamilySSF554551.26E-30283IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2580169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.2285175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKIVIRR IDNCTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYANT  60
SMKSVIERYN ICKEDQQVTN PESEVKFWQR EADILRQQLQ SLQENHRQLM GEQLYGLSIR  120
NLQDLESQLE LSLQGVRMKK EKILTDEIQE LNRKGSIIHQ ENVELYKKVN LLQQENTQLH  180
KKVYGTTDNE ATATSKNAFV QFPYSVRGGG EYPQTLFQLQ LCQPEQEYCE TSGSASATK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19169169MEF2C
5f28_B2e-19169169MEF2C
5f28_C2e-19169169MEF2C
5f28_D2e-19169169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.243860.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g031000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612958.11e-177agamous-like MADS-box protein AGL21 isoform X1
RefseqXP_024639969.11e-177agamous-like MADS-box protein AGL21 isoform X1
SwissprotQ6EP496e-96MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA9YWS11e-175A9YWS1_MEDTR; MADS-box protein
STRINGAES959161e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-89AGAMOUS-like 21
Publications ? help Back to Top
  1. Kevei Z, et al.
    Significant microsynteny with new evolutionary highlights is detected between Arabidopsis and legume model plants despite the lack of macrosynteny.
    Mol. Genet. Genomics, 2005. 274(6): p. 644-57
    [PMID:16273388]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]