PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g029680.2 | ||||||||
Common Name | MTR_5g029680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 503aa MW: 55357.6 Da PI: 4.4845 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114 | 9.7e-36 | 33 | 124 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++ ++sws+++nsfvv+d+ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+ Medtr5g029680.2 33 FLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLK 117 9********************999*****************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i r+k Medtr5g029680.2 118 SISRRKP 124 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-39 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.21E-35 | 28 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.3E-63 | 29 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.7E-32 | 33 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 33 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 72 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MDGASGGSGG GEGSATQIPA PTPMQNANAP PPFLSKTYDM VDDPSTDAIV SWSATNNSFV 60 VWDPPEFARD LLPKFFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKQLLKSIS 120 RRKPAHGHTQ QQAQQPHGQS SSVGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQQQQ 180 TTDSQLQTMV QRLQGMEQRQ QQMMSFLAKA VQSPGFFAQF VQQQNDSNRR ITEVNKKRRL 240 KQDGIAETTE QATPPDGQIV KYQPMMNDTA KAMLRKIMKW DTPRVESFNK NPDNYLIGDG 300 TSPSSAMDSN SSTSWNSGVT LQEVPPSSVQ STQFPVATGT QGHIPSSEKP EILSVPQAAA 360 SANVMKDGTH AASTIPTSQA DVIMPDIPSV PEIVPKSILD IPENDYMAPE TDDGFMDPSS 420 LGSLPIDLDC LSPGADIDDL LSSSIWDDLL QTPIPEDFEA NIDEISRGNE VQPTENGWDN 480 NTQPLDQLTE QMGLLSSDAK RI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-28 | 31 | 122 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-28 | 31 | 122 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-28 | 31 | 122 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 241 | NKKRRLKQ |
2 | 235 | 240 | KKRRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13769 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g029680.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ907235 | 0.0 | DQ907235.1 Medicago sativa heat shock transcription factor 1 (HSF1) mRNA, HSF1-b2 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003612845.1 | 0.0 | heat shock factor protein HSF8 isoform X1 | ||||
Swissprot | Q40152 | 1e-174 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | G7KDN6 | 0.0 | G7KDN6_MEDTR; Heat shock transcription factor A3 | ||||
STRING | AES95803 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-129 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g029680.2 |
Entrez Gene | 11420553 |
Publications ? help Back to Top | |||
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