PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g027570.1 | ||||||||
Common Name | MTR_5g027570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26545.7 Da PI: 6.0533 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.8e-14 | 91 | 137 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r WT+ E++l++++++++G+g+Wk I++++ ++t+ q+ s+ qky Medtr5g027570.1 91 RVHWTEGEHKLFLEGIEKYGKGRWKDISKEFVVTKTPIQIASHAQKY 137 668*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.824 | 86 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-16 | 88 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-9 | 90 | 140 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-18 | 90 | 141 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 91 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-12 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.60E-9 | 94 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEGRKVQQLP HHIDLNERTS IQDPSENSME QQENLDTDVI ESGHAAAILN PNDNNSVQAE 60 SVPEGSNEAN LVQAESVPEG SHEAKRGRRE RVHWTEGEHK LFLEGIEKYG KGRWKDISKE 120 FVVTKTPIQI ASHAQKYFIH QNVKDIEKRK KRRSIHDTTL NKNGTLVTLA VEQDEIPSVE 180 QQSETPPQGM QQTQTQQNEI SPMLCLLFSI GSTIPDKEKL EKMRDLLAKE LRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g027570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914128 | 0.0 | CU914128.2 Medicago truncatula chromosome 5 clone mth2-84e4, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003612667.1 | 1e-173 | transcription factor SRM1 | ||||
TrEMBL | G7K885 | 1e-172 | G7K885_MEDTR; Myb-like DNA-binding domain protein | ||||
STRING | AES95625 | 1e-172 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16911 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-26 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g027570.1 |
Entrez Gene | 11416947 |
Publications ? help Back to Top | |||
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