PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g026210.3
Common NameMTR_5g026210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family BES1
Protein Properties Length: 516aa    MW: 58388.7 Da    PI: 5.6598
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g026210.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822155.44e-48461931144
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                      +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+v++DGttyr+   p      +gs+a +s+es+ 
  Medtr5g026210.3  46 TGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWIVDADGTTYRQCLPPS----NMGSFAARSVESQP 135
                      589*******************************************************************766665....99***********9 PP

           DUF822  95 q.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvls 144
                      +  +l++++++  +e++s+ ++ ++  sp+s+ds+ +a+        as++p+ s+++
  Medtr5g026210.3 136 SgGTLRTCSVKETLENQSPGLRIDECVSPASIDSVLIAERdsknenyASVSPINSTDC 193
                      999********************************99988777766666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-4847191IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.1E-112212505IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-127215501IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.0E-63234500IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.7E-34252266IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.7E-34273291IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.7E-34295316IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.7E-34388410IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.7E-34461480IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MKNTTEDATS TQDLDPQSDH SSDYLPQPQP RRLRGFAATA AGTNSTGKGK KEREKEKERT  60
KLRERHRRAI TSRMLAGLRQ YGNFPLPARA DMNDVLAALA REAGWIVDAD GTTYRQCLPP  120
SNMGSFAARS VESQPSGGTL RTCSVKETLE NQSPGLRIDE CVSPASIDSV LIAERDSKNE  180
NYASVSPINS TDCLEADQLM QDIHSGVHQN DFNCTPYVPV YIKLPAGIIN KFCQLMDPEG  240
IRQELIHIKS LNIDGVVVDC WWGIVEGWNS QKYEWSGYRE LFSIIREFKL NIQVVMAFHE  300
CGGNDSSDAL ISLPQWVLDI GKDNQDIFFT DREGRRNTEC LSWGIDKERV LKGRTGIEVY  360
FDMMRSFRTE FDDLFAEGMI DAVEIGLGAS GELKYPSFSE RMGWRYPGIG EFQCYDKYLQ  420
HSLRRAAKLR GHSFWARGPD NAGHYNSMPH ETGFFCERGD YDNYYGRFFL HWYSQTLVDH  480
ADNVLSLANL AFEGTKIIVK VVFWYISFSC CGFIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6g_A1e-9721750511303beta-amylase
1v3i_A1e-9721750511303Beta-amylase
1wdq_A1e-9721750511303Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.80470.0flower| leaf| root| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g026210.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4630430.0CU463043.2 Medicago truncatula chromosome 5 clone mth2-85j9, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612541.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A072UEX10.0A0A072UEX1_MEDTR; Beta-amylase
STRINGAES954990.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]