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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g022780.1 | ||||||||
Common Name | MTR_5g022780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bZIP | ||||||||
Protein Properties | Length: 248aa MW: 27846.1 Da PI: 9.6814 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.4 | 3e-08 | 167 | 190 | 5 | 28 |
CHHHCHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaei 28 +r +r++kNRe+A rsR+RK+++i Medtr5g022780.1 167 RRNKRMIKNRESAARSRARKQEKI 190 699*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-6 | 163 | 240 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-13 | 164 | 226 | No hit | No description |
SuperFamily | SSF57959 | 5.44E-5 | 167 | 227 | No hit | No description |
CDD | cd14707 | 1.65E-22 | 167 | 226 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 170 | 185 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEEVWKDINL SSLNDQNTRP MIMSTRNSTF GGGVILQDFL TRPLTLDPTK SLDYSSNNSS 60 SSVASDQNNN NASFYCPIST TPPPLVTALS LNSRPDFLYD PLIRHNKHNN SQLLLQQQQH 120 NIGVSNVSPC FVNASPCDQN VGVPASSSFT CFGKRFGEAP DISPGERRNK RMIKNRESAA 180 RSRARKQEKI TSFLFSKFSA YTNELEQKVQ LLQEENARLR RQQQELWEAE SGGQQKKKSS 240 LYRTSSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g022780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123571 | 0.0 | AC123571.8 Medicago truncatula clone mth1-14n3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640475.1 | 1e-147 | protein FD | ||||
TrEMBL | G7JXL9 | 0.0 | G7JXL9_MEDTR; Basic leucine zipper transcription factor | ||||
STRING | AES95190 | 1e-168 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3755 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-23 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g022780.1 |
Entrez Gene | 11424087 |
Publications ? help Back to Top | |||
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