PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g021130.1 | ||||||||
Common Name | MTR_5g021130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 324aa MW: 35563 Da PI: 6.2986 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218.4 | 1.6e-67 | 94 | 254 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 +sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqqq+++++ +a +s + ++r+r+ ++++s+l++t+l Medtr5g021130.1 94 GSGSISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQLSAPKSFqqhgDIVPQNRHRD-LNNNNSSLACTRL 186 57899**********************************************99888877766665533322233444444.68999999****9 PP DUF702 92 ssaeskkeletss......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ s + ++ +P+ v+s+a frcvrvssvd++eee+aY tav+igGhvf+GiLyd+G+++ Medtr5g021130.1 187 PTNRSLTLPSA-GlldemnFPAVVNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYGPDH 254 98876543222.1244555************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.9E-64 | 97 | 253 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.3E-28 | 99 | 141 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.1E-25 | 205 | 252 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MAGLFSLGRT EEENQQNNNP TTEFWYNKND DSVVSNNSYR GFEIWNQHQQ QQLFSLQQPQ 60 QQDLYSSGVV LGVGPTNRVC SSDENRSTVF IGSGSGSISC QDCGNQAKKD CPHMRCRTCC 120 KSRGFDCQTH VKSTWVPAAR RRERQQQQQQ QQLSAPKSFQ QHGDIVPQNR HRDLNNNNSS 180 LACTRLPTNR SLTLPSAGLL DEMNFPAVVN SPAEFRCVRV SSVDENEEEY AYSTAVNIGG 240 HVFRGILYDY GPDHGSNSYN MAAGNASNSS GTALEGVVEP LNLISGVPAS GVGEIVDPSS 300 LYPAPLNTFM PSSGTQFFPH PRS* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g021130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CR955005 | 0.0 | CR955005.2 Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003612086.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 2e-77 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | G7KGA2 | 0.0 | G7KGA2_MEDTR; Putative transcription factor STY-LRP1 family | ||||
STRING | AES95044 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-62 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g021130.1 |
Entrez Gene | 11426467 |
Publications ? help Back to Top | |||
---|---|---|---|
|