PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g020510.1
Common NameMTR_5g020510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 298aa    MW: 33349.4 Da    PI: 9.2874
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g020510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.59.9e-3196152360
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      k+ Y+eCl+NhAas+G+h+vDGCgEfmps geegt++ +kCaAC+CHRnFHR++v+++
  Medtr5g020510.1  96 KICYRECLRNHAASMGSHVVDGCGEFMPS-GEEGTPQYFKCAACDCHRNFHRKHVQQQ 152
                      789*************************9.999********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.7E-2897149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1899147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.41599148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-2799148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS501578.621133164IPR007087Zinc finger, C2H2
PROSITE patternPS000280135159IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.10.602.7E-26227295IPR009057Homeodomain-like
SuperFamilySSF466891.58E-16229294IPR009057Homeodomain-like
TIGRFAMsTIGR015657.6E-26233290IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
METKMSQTTL GYNRDSSSSS PTPPPPPQVH TLVFNNPPQN SHPNHNTTTN LYPPPHLAPS  60
SQRPIIDPDL TAATTTTTSI TTQPQPQQII PSTATKICYR ECLRNHAASM GSHVVDGCGE  120
FMPSGEEGTP QYFKCAACDC HRNFHRKHVQ QQHSIPQQHV QHVPNYHHSN NNGHLNLPTP  180
SSSSQRVSQP SSGQVPPSMM MTFGSVPAES SSEDLNMFGA QFSIQTPQQP LSKKRVRTKF  240
SQQQKDKMME FAEKIGWKIQ KHDEQEVQQF CSQVGIKRQV FKVFMHNNKQ AMKKQQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202322911675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g020510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1376610.0CU137661.2 Medicago truncatula chromosome 5 clone mth4-96g16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612025.20.0zinc-finger homeodomain protein 6
SwissprotQ9ZPW75e-59ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLG7KDN20.0G7KDN2_MEDTR; Homeobox domain, ZF-HD class protein
STRINGAES949830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.16e-54homeobox protein 24
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]