PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g020510.1 | ||||||||
Common Name | MTR_5g020510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 298aa MW: 33349.4 Da PI: 9.2874 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.5 | 9.9e-31 | 96 | 152 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 k+ Y+eCl+NhAas+G+h+vDGCgEfmps geegt++ +kCaAC+CHRnFHR++v+++ Medtr5g020510.1 96 KICYRECLRNHAASMGSHVVDGCGEFMPS-GEEGTPQYFKCAACDCHRNFHRKHVQQQ 152 789*************************9.999********************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.7E-28 | 97 | 149 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-18 | 99 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.415 | 99 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-27 | 99 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS50157 | 8.621 | 133 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 227 | 295 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-16 | 229 | 294 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-26 | 233 | 290 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
METKMSQTTL GYNRDSSSSS PTPPPPPQVH TLVFNNPPQN SHPNHNTTTN LYPPPHLAPS 60 SQRPIIDPDL TAATTTTTSI TTQPQPQQII PSTATKICYR ECLRNHAASM GSHVVDGCGE 120 FMPSGEEGTP QYFKCAACDC HRNFHRKHVQ QQHSIPQQHV QHVPNYHHSN NNGHLNLPTP 180 SSSSQRVSQP SSGQVPPSMM MTFGSVPAES SSEDLNMFGA QFSIQTPQQP LSKKRVRTKF 240 SQQQKDKMME FAEKIGWKIQ KHDEQEVQQF CSQVGIKRQV FKVFMHNNKQ AMKKQQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 232 | 291 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g020510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU137661 | 0.0 | CU137661.2 Medicago truncatula chromosome 5 clone mth4-96g16, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003612025.2 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 5e-59 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | G7KDN2 | 0.0 | G7KDN2_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | AES94983 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 6e-54 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g020510.1 |
Entrez Gene | 11413632 |
Publications ? help Back to Top | |||
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