PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g019650.1 | ||||||||
Common Name | MTR_5g019650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 26055.5 Da PI: 6.5359 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.9e-21 | 53 | 107 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq+++Lee F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Medtr5g019650.1 53 KKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKN 107 56699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 107.9 | 7.6e-35 | 52 | 139 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kkr+ls+eqv++LEe+F +e+kLe+e+K +la eLgl+prqvavWFqnrRAR+k+k+lE++y +Lk+ +++ e++ Le++ +e + Medtr5g019650.1 52 NKKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKIHESTILEKCLLETKLREQH 139 59******************************************************************************99877654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.346 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-18 | 51 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-18 | 52 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.19E-14 | 53 | 109 | No hit | No description |
Pfam | PF00046 | 4.3E-18 | 53 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 55 | 114 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.3E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MNHQDQMMLM SQLFPACEYT QIISQQGEKK PKPRRKRSKK NKGGENSAND MNKKRKLSDE 60 QVNILEENFG NEHKLESEKK DRLAMELGLD PRQVAVWFQN RRARWKNKKL EEEYFSLKKI 120 HESTILEKCL LETKLREQHS EALKLREQLS EAEKEIQRLR EPFERVTSSS SSTSSMSQSV 180 EVVDPPFLGE FGVDNGYDDD VFFMPNETCY YNGMEWISLY M* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 55 | RKRSKKNKGGENSANDMNKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24320 | 0.0 | flower| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g019650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR962121 | 0.0 | CR962121.2 Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611946.1 | 1e-164 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 3e-65 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | G7KC72 | 1e-163 | G7KC72_MEDTR; Homeobox leucine zipper protein | ||||
STRING | AES94904 | 1e-164 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 8e-59 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g019650.1 |
Entrez Gene | 11407095 |
Publications ? help Back to Top | |||
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