PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g017470.1
Common NameMTR_5g017470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 289aa    MW: 32379.1 Da    PI: 7.701
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g017470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.4e-36101012102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y++++d +++++iswse+g+sfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+++k+ll+
  Medtr5g017470.1  10 FLLKTYQMVDDLATDDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDK---------WEFSNENFKRNHKHLLT 94 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k+
  Medtr5g017470.1  95 DIKRRKT 101
                      *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-38293IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-33699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3708.8E-4153186IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSQRSAPAPF LLKTYQMVDD LATDDVISWS ESGESFVVWK HADFARDLLP KYFKHNNFSS  60
FVRQLNTYGF RKLVPDKWEF SNENFKRNHK HLLTDIKRRK TISQSSSQPV EVEKTSVNDN  120
SPSNSGNDGV GSTSTSSSNS KNPGSVETTT LPQCVNLSSE NEKLKKDNET LNCELARAKK  180
QCEELVAFLK DNLNVGPDQI DRIMKQQGNC CESVQNAVGE NEESGRDCLK LFGVWLREEN  240
YTNERNNKKR GCEDQLSFGG PRAKVGNNVV DFSAVNVVNM MKSGKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23610126131Heat shock factor protein 1
5d5v_B1e-23610126131Heat shock factor protein 1
5d5v_D1e-23610126131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.134590.0glandular trichome| leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g017470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1428390.0BT142839.1 Medicago truncatula clone JCVI-FLMt-21B10 unknown mRNA.
GenBankBT1477770.0BT147777.1 Medicago truncatula clone JCVI-FLMt-7F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611751.20.0heat shock factor protein HSF24
SwissprotP223352e-95HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLI3SQU10.0I3SQU1_MEDTR; Heat shock transcription factor
STRINGAES947090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-72heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]