PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g017470.1 | ||||||||
Common Name | MTR_5g017470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 289aa MW: 32379.1 Da PI: 7.701 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.1 | 4.4e-36 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+y++++d +++++iswse+g+sfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk+++k+ll+ Medtr5g017470.1 10 FLLKTYQMVDDLATDDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDK---------WEFSNENFKRNHKHLLT 94 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +ikr+k+ Medtr5g017470.1 95 DIKRRKT 101 *****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.5E-38 | 2 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-59 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.36E-33 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.3E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-31 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.370 | 8.8E-4 | 153 | 186 | IPR014751 | DNA repair protein XRCC4, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MSQRSAPAPF LLKTYQMVDD LATDDVISWS ESGESFVVWK HADFARDLLP KYFKHNNFSS 60 FVRQLNTYGF RKLVPDKWEF SNENFKRNHK HLLTDIKRRK TISQSSSQPV EVEKTSVNDN 120 SPSNSGNDGV GSTSTSSSNS KNPGSVETTT LPQCVNLSSE NEKLKKDNET LNCELARAKK 180 QCEELVAFLK DNLNVGPDQI DRIMKQQGNC CESVQNAVGE NEESGRDCLK LFGVWLREEN 240 YTNERNNKKR GCEDQLSFGG PRAKVGNNVV DFSAVNVVNM MKSGKVCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 6 | 101 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 6 | 101 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 6 | 101 | 26 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13459 | 0.0 | glandular trichome| leaf| pod| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g017470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142839 | 0.0 | BT142839.1 Medicago truncatula clone JCVI-FLMt-21B10 unknown mRNA. | |||
GenBank | BT147777 | 0.0 | BT147777.1 Medicago truncatula clone JCVI-FLMt-7F21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611751.2 | 0.0 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 2e-95 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | I3SQU1 | 0.0 | I3SQU1_MEDTR; Heat shock transcription factor | ||||
STRING | AES94709 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7114 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 4e-72 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g017470.1 |
Entrez Gene | 11409901 |
Publications ? help Back to Top | |||
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