PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g015340.1
Common NameMTR_5g015340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 395aa    MW: 43218.7 Da    PI: 10.1235
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g015340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Medtr5g015340.1  5 KQKWTAEEEAALKAGVVKYGAGKWRTILTDPDfstilRMRSNVDLKDKWRN 55
                     79***********************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.823161IPR017930Myb domain
SuperFamilySSF466891.33E-14264IPR009057Homeodomain-like
SMARTSM007176.6E-5459IPR001005SANT/Myb domain
PfamPF002491.4E-6555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-12556IPR009057Homeodomain-like
CDDcd116609.00E-18657No hitNo description
SMARTSM005261.5E-12115180IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-15116193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.443117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.8E-14120189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.2E-9122178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKYGAGKWRT ILTDPDFSTI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKSLPPPK NENNHHPTST AIVQYNPEVA APKPLSVSGG MSTSKEQISR  120
LDSLIFDSIV KLKEPKGSDI AAIAAYIEDQ YRSPPNLIKL LSTKLKHMVA SGKLVKVNHK  180
YRIATNSTKT SEKRRCSSLL LLEGRPKDSP KAEKTDANVL SKSQIDVELL KMRGVTAQEV  240
AAAAAKAVAE AEAAIAEAET AAREAETAEA EAEAARVFAK AATKALKCRR LNIWVVHGLV  300
YRRIELNYKN SWRNPNQTLI AAPESNQTGS VLRLTMGTYL IQCGTPHIKT EHPECDPIAG  360
TYLIQCGTPH VKTEHLERDL SGPIATVFAS SWLT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.95670.0pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g015340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684770.0EF468477.1 Medicago truncatula MYB transcription factor MYB25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453466.10.0telomere repeat-binding factor 2 isoform X2
SwissprotQ9FJW53e-73TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLG7K2G90.0G7K2G9_MEDTR; MYB transcription factor
STRINGAES945200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-63MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]