PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014520.1
Common NameMTR_5g014520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 334aa    MW: 37465.7 Da    PI: 7.5375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12157203455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Medtr5g014520.1 157 DHIIAERKRREKLSQCLIALAALIPGL-----KKMDKASVLGDAIKYVKELQ 203
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-16157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-17158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-11158207No hitNo description
SMARTSM003534.2E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKLNSSSNS SSTSWLSDLL LEEMEIEGCD LFQQCEQNLF GEKEFLSNDI ASIFQQEENF  60
QHQPLLSSES YSSSYPLEKN FERPNKKLKK NTSSPSSTTS QILSFDCTLN TKKNKVVPLS  120
QTELPQNRKG SLQKQNIVET IKPQGQGTKR SVAHNQDHII AERKRREKLS QCLIALAALI  180
PGLKKMDKAS VLGDAIKYVK ELQERLRVLE EQNKNSHVQS VVTVDEQQLS YDSSNSDDSE  240
VASGNNETLP HVEAKVLDKD VLIRIHCQKQ KGLLLKILVE IQKLHLFVVN NSVLPFGDSI  300
LDITIVAQMG IGYNLTRNDL VKKLRVAALR AMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118840.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1390340.0BT139034.1 Medicago truncatula clone JCVI-FLMt-7C6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611493.10.0transcription factor bHLH18
TrEMBLG7K1250.0G7K125_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-47bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]